Variant report

Variant	rs6854056
Chromosome Location	chr4:99755352-99755353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10019726	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10446681	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11097638	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs1160490	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4401453	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4558877	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4699679	0.91[AFR][1000 genomes]
rs6851217	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6851372	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6855496	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698057	0.87[AFR][1000 genomes]
rs9684353	0.94[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879654	chr4:99748988-99877402	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99754800-99755400	Flanking Active TSS	Fetal Heart	heart
2	chr4:99755000-99755600	Enhancers	Left Ventricle	heart
3	chr4:99755200-99755400	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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