Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99770053..99772360-chr4:99779402..99782266,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10010685	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10011147	0.87[ASN][1000 genomes]
rs10025191	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032035	0.81[ASN][1000 genomes]
rs11097638	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12108521	0.81[ASN][1000 genomes]
rs13135078	0.83[ASN][1000 genomes]
rs2120377	0.81[ASN][1000 genomes]
rs2165945	0.81[ASN][1000 genomes]
rs28705981	0.81[ASN][1000 genomes]
rs4632668	0.81[ASN][1000 genomes]
rs4699679	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699684	0.81[ASN][1000 genomes]
rs5025596	0.81[ASN][1000 genomes]
rs6532770	0.81[ASN][1000 genomes]
rs6532771	0.81[ASN][1000 genomes]
rs6813043	0.81[ASN][1000 genomes]
rs6854056	0.87[AFR][1000 genomes]
rs7673626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9684353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991845	0.85[ASN][1000 genomes]
rs9997942	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879654	chr4:99748988-99877402	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99769200-99772600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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