Variant report
| Variant | rs13135078 |
|---|---|
| Chromosome Location | chr4:99782705-99782706 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:99782189..99783719-chr4:103748650..103751442,2 | K562 | blood: | |
| 2 | chr4:99780530..99783246-chr4:99785564..99787970,2 | K562 | blood: | |
| 3 | chr4:99780979..99783904-chr4:99786439..99788343,2 | K562 | blood: | |
| 4 | chr4:99757583..99759723-chr4:99781646..99784129,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000246560 | Chromatin interaction |
| ENSG00000109332 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10010685 | 0.83[ASN][1000 genomes] |
| rs10020784 | 0.93[ASN][1000 genomes] |
| rs10025191 | 0.83[ASN][1000 genomes] |
| rs10032035 | 0.81[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11097638 | 0.91[ASN][1000 genomes] |
| rs12108521 | 0.81[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2120377 | 0.94[ASN][1000 genomes] |
| rs2165945 | 0.81[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28705981 | 0.94[ASN][1000 genomes] |
| rs4348102 | 0.91[ASN][1000 genomes] |
| rs4632668 | 0.82[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4699368 | 0.93[ASN][1000 genomes] |
| rs4699679 | 0.83[ASN][1000 genomes] |
| rs4699684 | 0.94[ASN][1000 genomes] |
| rs4699686 | 0.89[ASN][1000 genomes] |
| rs4699687 | 0.89[ASN][1000 genomes] |
| rs5025596 | 0.94[ASN][1000 genomes] |
| rs6532770 | 0.82[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6532771 | 0.94[ASN][1000 genomes] |
| rs6813043 | 0.81[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7657231 | 0.81[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7673626 | 0.83[ASN][1000 genomes] |
| rs7698057 | 0.83[ASN][1000 genomes] |
| rs7698463 | 0.83[ASN][1000 genomes] |
| rs9684353 | 0.83[ASN][1000 genomes] |
| rs9991845 | 0.94[ASN][1000 genomes] |
| rs9997942 | 0.81[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9998221 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009017 | chr4:99669441-100406394 | Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| 2 | nsv879654 | chr4:99748988-99877402 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:99781800-99782800 | Flanking Active TSS | K562 | blood |
| 2 | chr4:99782400-99782800 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
| 3 | chr4:99782400-99783600 | Enhancers | Stomach Mucosa | stomach |
