Variant report
| Variant | rs4699686 |
|---|---|
| Chromosome Location | chr4:99789516-99789517 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151247 | Chromatin interaction |
| ENSG00000238449 | Chromatin interaction |
| ENSG00000263923 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10010610 | 0.99[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10020784 | 0.93[ASN][1000 genomes] |
| rs10032035 | 0.94[ASN][1000 genomes] |
| rs10032966 | 0.92[AMR][1000 genomes] |
| rs10516437 | 0.91[AMR][1000 genomes] |
| rs11097638 | 0.83[ASN][1000 genomes] |
| rs11725932 | 0.80[AMR][1000 genomes] |
| rs11728783 | 0.91[AMR][1000 genomes] |
| rs11737130 | 0.91[AMR][1000 genomes] |
| rs11737186 | 0.91[AMR][1000 genomes] |
| rs12108521 | 0.94[ASN][1000 genomes] |
| rs13135078 | 0.89[ASN][1000 genomes] |
| rs2120377 | 0.92[ASN][1000 genomes] |
| rs2165945 | 0.92[ASN][1000 genomes] |
| rs28430857 | 0.92[AMR][1000 genomes] |
| rs28577966 | 0.80[AMR][1000 genomes] |
| rs28613604 | 0.84[AMR][1000 genomes] |
| rs28705981 | 0.94[ASN][1000 genomes] |
| rs4348102 | 0.97[ASN][1000 genomes] |
| rs4632668 | 0.94[ASN][1000 genomes] |
| rs4699368 | 0.90[ASN][1000 genomes] |
| rs4699684 | 0.92[ASN][1000 genomes] |
| rs4699687 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5025596 | 0.94[ASN][1000 genomes] |
| rs6532770 | 0.92[ASN][1000 genomes] |
| rs6532771 | 0.94[ASN][1000 genomes] |
| rs6813043 | 0.94[ASN][1000 genomes] |
| rs6830125 | 0.80[AMR][1000 genomes] |
| rs6841295 | 0.92[AMR][1000 genomes] |
| rs6846266 | 0.92[AMR][1000 genomes] |
| rs6846475 | 0.84[AMR][1000 genomes] |
| rs7657231 | 0.96[ASN][1000 genomes] |
| rs7664964 | 0.80[AMR][1000 genomes] |
| rs7674319 | 0.84[AMR][1000 genomes] |
| rs7696573 | 0.84[AMR][1000 genomes] |
| rs7696584 | 0.84[AMR][1000 genomes] |
| rs7697071 | 0.84[AMR][1000 genomes] |
| rs9332467 | 0.85[AMR][1000 genomes] |
| rs9991845 | 0.86[ASN][1000 genomes] |
| rs9997942 | 0.94[ASN][1000 genomes] |
| rs9998221 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009017 | chr4:99669441-100406394 | Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| 2 | nsv879654 | chr4:99748988-99877402 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 3 | nsv879655 | chr4:99783733-99843113 | Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:99785400-99798800 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 2 | chr4:99786200-99791200 | Weak transcription | Stomach Mucosa | stomach |
| 3 | chr4:99786400-99792200 | Weak transcription | K562 | blood |
