Variant report

Variant	rs4699368
Chromosome Location	chr4:99784555-99784556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99783231..99785610-chr4:99828506..99831490,2	K562	blood:
2	chr4:99777682..99780373-chr4:99782852..99785321,2	K562	blood:
3	chr4:99062679..99064637-chr4:99784102..99786080,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163116	Chromatin interaction
ENSG00000249055	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10007957	0.81[AMR][1000 genomes]
rs10019506	0.85[AMR][1000 genomes]
rs10020687	0.81[AMR][1000 genomes]
rs10020784	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10022521	0.81[AMR][1000 genomes]
rs10032035	0.96[ASN][1000 genomes]
rs10461135	0.83[AMR][1000 genomes]
rs11097638	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12108521	0.96[ASN][1000 genomes]
rs1230149	0.81[AMR][1000 genomes]
rs13135078	0.93[ASN][1000 genomes]
rs17028244	0.88[CEU][hapmap];0.85[AMR][1000 genomes]
rs2120377	0.99[ASN][1000 genomes]
rs2165945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2602889	1.00[CEU][hapmap]
rs28367437	0.81[AMR][1000 genomes]
rs28499420	0.81[AMR][1000 genomes]
rs28529446	0.81[AMR][1000 genomes]
rs28622595	0.81[AMR][1000 genomes]
rs28633499	0.81[AMR][1000 genomes]
rs28705981	0.96[ASN][1000 genomes]
rs4348102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4632668	0.96[ASN][1000 genomes]
rs4699684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4699686	0.90[ASN][1000 genomes]
rs4699687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs5025596	0.96[ASN][1000 genomes]
rs60120090	0.85[AMR][1000 genomes]
rs6532770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6532771	0.96[ASN][1000 genomes]
rs6532774	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs6813043	0.96[ASN][1000 genomes]
rs7657231	0.94[ASN][1000 genomes]
rs7671306	0.81[AMR][1000 genomes]
rs7676504	0.87[CEU][hapmap]
rs7679685	0.81[AMR][1000 genomes]
rs7684964	0.81[AMR][1000 genomes]
rs9684353	0.85[JPT][hapmap]
rs994636	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs9991845	0.93[ASN][1000 genomes]
rs9997942	0.96[ASN][1000 genomes]
rs9998221	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879654	chr4:99748988-99877402	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv879655	chr4:99783733-99843113	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99783600-99785800	Weak transcription	Stomach Mucosa	stomach
2	chr4:99784000-99785200	Weak transcription	K562	blood

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