Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99725398..99727273-chr4:99729842..99731719,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10010685	0.87[ASN][1000 genomes]
rs10025191	0.87[ASN][1000 genomes]
rs11097638	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs11727079	1.00[YRI][hapmap]
rs11727086	1.00[YRI][hapmap]
rs11735758	1.00[YRI][hapmap]
rs13124855	1.00[YRI][hapmap]
rs17511498	1.00[YRI][hapmap]
rs17570252	1.00[YRI][hapmap]
rs2165944	1.00[YRI][hapmap]
rs2165945	0.85[JPT][hapmap]
rs4348102	0.85[JPT][hapmap]
rs4699368	0.85[JPT][hapmap]
rs4699369	1.00[YRI][hapmap]
rs4699679	0.87[ASN][1000 genomes]
rs4699684	0.82[JPT][hapmap]
rs4699687	0.85[JPT][hapmap]
rs4699689	1.00[YRI][hapmap]
rs6532770	0.85[JPT][hapmap]
rs7673626	0.87[ASN][1000 genomes]
rs7698057	0.87[ASN][1000 genomes]
rs7698463	0.87[ASN][1000 genomes]
rs9684353	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10011147	C4orf17	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99729600-99730800	Enhancers	Brain Substantia Nigra	brain
2	chr4:99730000-99730800	Enhancers	Brain Angular Gyrus	brain
3	chr4:99730000-99730800	Enhancers	Brain Hippocampus Middle	brain
4	chr4:99730200-99730800	Enhancers	Brain Inferior Temporal Lobe	brain

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