Variant report

Variant	rs11604905
Chromosome Location	chr11:10428457-10428458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:10428333-10429040	MCF10A-Er-Src	breast:	n/a	n/a
2	SP1	chr11:10428423-10429064	A549	lung:	n/a	n/a
3	EP300	chr11:10427209-10429313	SK-N-SH	brain:	n/a	chr11:10428417-10428426 chr11:10427808-10427816
4	RAD21	chr11:10426934-10429717	SK-N-SH	brain:	n/a	chr11:10427853-10427862 chr11:10427853-10427865 chr11:10427852-10427865 chr11:10427849-10427868 chr11:10427271-10427280
5	TCF12	chr11:10428437-10429347	SK-N-SH	brain:	n/a	n/a
6	CEBPD	chr11:10428407-10428939	K562	blood:	n/a	n/a
7	CTCF	chr11:10427285-10428460	HCT-116	colon:	n/a	chr11:10427848-10427866 chr11:10427853-10427861 chr11:10427850-10427871
8	EP300	chr11:10428393-10429053	A549	lung:	n/a	chr11:10428417-10428426
9	MAX	chr11:10428433-10429075	A549	lung:	n/a	n/a
10	EP300	chr11:10428418-10429225	SK-N-SH	brain:	n/a	n/a
11	GATA3	chr11:10428396-10429266	SK-N-SH	brain:	n/a	n/a
12	TCF12	chr11:10428398-10429163	A549	lung:	n/a	n/a
13	GATA3	chr11:10428338-10429198	SK-N-SH	brain:	n/a	n/a
14	FOS	chr11:10427753-10429032	MCF10A-Er-Src	breast:	n/a	chr11:10428772-10428783
15	MAX	chr11:10428407-10429138	A549	lung:	n/a	n/a
16	FOSL2	chr11:10428396-10429162	A549	lung:	n/a	n/a
17	GATA3	chr11:10428286-10429134	A549	lung:	n/a	n/a
18	TEAD4	chr11:10428376-10428960	K562	blood:	n/a	n/a
19	FOS	chr11:10428415-10429042	MCF10A-Er-Src	breast:	n/a	chr11:10428772-10428783
20	TEAD4	chr11:10428429-10428937	K562	blood:	n/a	n/a
21	RAD21	chr11:10427396-10429051	HCT-116	colon:	n/a	chr11:10427853-10427862 chr11:10427853-10427865 chr11:10427852-10427865 chr11:10427849-10427868
22	TCF12	chr11:10428388-10429335	SK-N-SH	brain:	n/a	n/a
23	SP1	chr11:10428432-10429091	A549	lung:	n/a	n/a
24	FOSL1	chr11:10428274-10429121	HCT-116	colon:	n/a	n/a
25	MYC	chr11:10428456-10429002	MCF10A-Er-Src	breast:	n/a	n/a
26	EP300	chr11:10428377-10428854	K562	blood:	n/a	chr11:10428417-10428426

No.	Distal block	Cell Line	Cell type
1	chr11:10427758..10428669-chr11:10756932..10757785,3	MCF-7	breast:
2	chr11:10427762..10428619-chr11:10675503..10676394,3	K562	blood:
3	chr11:10427272..10428747-chr11:10756868..10757977,15	K562	blood:
4	chr11:10427808..10432250-chr11:10475440..10478017,5	K562	blood:

Variant related genes	Relation type
AMPD3	TF binding region
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11603317	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605983	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606151	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606153	0.88[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607345	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11608047	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801986	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34095660	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34656088	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890315	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1037131	chr11:10401998-10429998	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553477	chr11:10403539-10429998	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10415600-10436000	Weak transcription	Right Ventricle	heart
2	chr11:10420400-10429400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:10422200-10430800	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:10423000-10428800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:10423000-10430400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:10423000-10430600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:10423200-10428600	Weak transcription	Right Atrium	heart
8	chr11:10423200-10429200	Weak transcription	Lung	lung
9	chr11:10423400-10428600	Weak transcription	Brain Substantia Nigra	brain
10	chr11:10423800-10428600	Weak transcription	Brain Anterior Caudate	brain
11	chr11:10423800-10430600	Weak transcription	Brain Angular Gyrus	brain
12	chr11:10425000-10429000	Weak transcription	Placenta	Placenta
13	chr11:10426000-10428600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:10427200-10428600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:10427200-10429000	Enhancers	Adipose Nuclei	Adipose
16	chr11:10427200-10429000	Enhancers	NHLF	lung
17	chr11:10427200-10431000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr11:10427200-10431200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:10427200-10432600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:10427400-10428600	Enhancers	NHDF-Ad	bronchial
21	chr11:10427400-10429200	Enhancers	Osteobl	bone
22	chr11:10427400-10429400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:10427400-10429800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:10427400-10431200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:10427400-10431400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr11:10427400-10432400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:10427400-10432800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:10427600-10428800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:10427600-10429200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr11:10427600-10429200	Weak transcription	Spleen	Spleen
31	chr11:10427600-10429600	Enhancers	HUVEC	blood vessel
32	chr11:10427600-10429800	Enhancers	NHEK	skin
33	chr11:10427600-10430600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:10427600-10432800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:10427800-10428600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:10427800-10428800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:10427800-10428800	Enhancers	Duodenum Mucosa	Duodenum
38	chr11:10427800-10428800	Weak transcription	Psoas Muscle	Psoas
39	chr11:10427800-10429400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:10427800-10429600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:10427800-10429600	Enhancers	K562	blood
42	chr11:10427800-10429600	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr11:10427800-10429800	Enhancers	HMEC	breast
44	chr11:10427800-10430800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:10427800-10435000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:10427800-10435200	Weak transcription	Brain Hippocampus Middle	brain
47	chr11:10427800-10436000	Weak transcription	HSMMtube	muscle
48	chr11:10428000-10428600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr11:10428000-10429200	Weak transcription	Pancreas	Pancrea
50	chr11:10428000-10429200	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links