Variant report

Variant	rs11605022
Chromosome Location	chr11:76872414-76872415
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4944143	0.88[CEU][hapmap]
rs4944145	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76852800-76873000	Weak transcription	Ovary	ovary
2	chr11:76864800-76882200	Weak transcription	HepG2	liver
3	chr11:76865000-76882800	Strong transcription	Fetal Intestine Large	intestine
4	chr11:76865600-76882000	Strong transcription	Fetal Intestine Small	intestine
5	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
6	chr11:76871400-76874800	Strong transcription	Liver	Liver
7	chr11:76872000-76874400	Weak transcription	Aorta	Aorta
8	chr11:76872200-76878600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:76872400-76872600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:76872400-76873200	Enhancers	Spleen	Spleen

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links