Variant report

Variant	rs11605800
Chromosome Location	chr11:76519839-76519840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76432458..76434385-chr11:76518685..76520926,2	K562	blood:
2	chr11:76489897..76492683-chr11:76518337..76520113,2	MCF-7	breast:
3	chr11:76444321..76446462-chr11:76517342..76520030,2	K562	blood:
4	chr11:76518255..76520298-chr11:76572077..76574099,2	MCF-7	breast:
5	chr11:76516428..76518545-chr11:76518786..76521184,2	MCF-7	breast:
6	chr11:76505701..76507573-chr11:76519620..76521657,2	MCF-7	breast:
7	chr11:76497829..76500317-chr11:76518217..76520054,2	MCF-7	breast:
8	chr11:76516686..76519995-chr11:76522035..76525250,3	MCF-7	breast:
9	chr11:76519335..76520044-chr11:76630346..76631103,2	MCF-7	breast:
10	chr11:76518608..76521544-chr11:76522055..76526314,3	K562	blood:
11	chr11:76516373..76518435-chr11:76518489..76520220,2	MCF-7	breast:

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11236946	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236947	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28407842	0.84[ASN][1000 genomes]
rs56048519	0.80[AFR][1000 genomes]
rs57918050	0.81[ASN][1000 genomes]
rs7128590	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76510600-76520200	Enhancers	Adipose Nuclei	Adipose
2	chr11:76510800-76521200	Weak transcription	Spleen	Spleen
3	chr11:76511000-76521200	Weak transcription	HUVEC	blood vessel
4	chr11:76511000-76521400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:76511800-76521200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:76513600-76520200	Enhancers	Placenta	Placenta
7	chr11:76516200-76520200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:76517000-76521000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:76518600-76521000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:76518600-76521200	Weak transcription	Esophagus	oesophagus
11	chr11:76518600-76521200	Weak transcription	Stomach Mucosa	stomach
12	chr11:76518800-76521000	Weak transcription	Liver	Liver
13	chr11:76518800-76521200	Weak transcription	Brain Anterior Caudate	brain
14	chr11:76518800-76521200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:76518800-76521200	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:76518800-76521200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:76518800-76521200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:76518800-76521200	Weak transcription	Right Atrium	heart
19	chr11:76518800-76521400	Weak transcription	NHEK	skin
20	chr11:76518800-76521600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:76519000-76521200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:76519000-76521200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:76519000-76521200	Weak transcription	Hela-S3	cervix
24	chr11:76519000-76521600	Weak transcription	Fetal Intestine Large	intestine
25	chr11:76519200-76521400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:76519400-76521000	Weak transcription	K562	blood
27	chr11:76519400-76521200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:76519400-76521200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:76519400-76521200	Weak transcription	Lung	lung
30	chr11:76519400-76521400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:76519400-76521400	Weak transcription	Osteobl	bone
32	chr11:76519400-76521600	Weak transcription	NHDF-Ad	bronchial
33	chr11:76519600-76521200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links