Variant report

Variant	rs28407842
Chromosome Location	chr11:76532135-76532136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11236947	0.84[ASN][1000 genomes]
rs11236954	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11236960	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11236961	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11600737	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11605800	0.84[ASN][1000 genomes]
rs11607420	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12278208	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12278844	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1440976	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56048519	0.88[EUR][1000 genomes]
rs61336866	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592669	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6592670	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7106688	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7122943	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7128590	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7930972	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7932943	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7942487	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7948381	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76531600-76533600	Weak transcription	A549	lung
2	chr11:76531600-76534400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:76531800-76533400	Weak transcription	K562	blood
4	chr11:76531800-76533400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:76531800-76533600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:76531800-76534400	Weak transcription	Adipose Nuclei	Adipose
7	chr11:76531800-76534600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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