Variant report

Variant	rs6592669
Chromosome Location	chr11:76535305-76535306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76531797..76536472-chr11:76570745..76574159,6	MCF-7	breast:
2	chr11:76493947..76496301-chr11:76534591..76536584,2	MCF-7	breast:
3	chr11:76497234..76499501-chr11:76534793..76537709,2	K562	blood:
4	chr11:76497529..76499535-chr11:76534642..76536244,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000255100	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11236954	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236960	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236961	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11600598	0.83[EUR][1000 genomes]
rs11600737	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11607420	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11608202	0.83[EUR][1000 genomes]
rs12278208	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12278844	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1440976	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28407842	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56048519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57918050	0.87[EUR][1000 genomes]
rs61336866	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592666	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6592670	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7106688	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7122943	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7128590	1.00[EUR][1000 genomes]
rs7930972	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942487	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948381	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3332513	chr11:76533354-76535352	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76533600-76537400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:76533600-76537400	Enhancers	HMEC	breast
3	chr11:76533800-76536000	Weak transcription	GM12878-XiMat	blood
4	chr11:76533800-76537000	Enhancers	NHDF-Ad	bronchial
5	chr11:76534200-76537400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:76534400-76535400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:76534400-76535600	Enhancers	Right Atrium	heart
8	chr11:76534400-76535600	Flanking Active TSS	A549	lung
9	chr11:76534400-76535800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr11:76534400-76535800	Flanking Active TSS	Hela-S3	cervix
11	chr11:76534400-76536800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:76534400-76537200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:76534400-76537200	Enhancers	Placenta	Placenta
14	chr11:76534400-76537400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:76534600-76535400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr11:76534600-76535400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:76534600-76535400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:76534600-76535400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:76534600-76535400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr11:76534600-76535400	Enhancers	Stomach Mucosa	stomach
21	chr11:76534600-76535600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:76534600-76535600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:76534600-76535600	Enhancers	Primary B cells from cord blood	blood
24	chr11:76534600-76535600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:76534600-76535800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:76534600-76535800	Flanking Active TSS	K562	blood
27	chr11:76534600-76535800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr11:76534600-76535800	Enhancers	NHLF	lung
29	chr11:76534600-76536000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:76534600-76536400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:76534600-76536600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:76534600-76536800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:76534600-76536800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:76534600-76536800	Enhancers	Esophagus	oesophagus
35	chr11:76534600-76536800	Enhancers	Fetal Muscle Leg	muscle
36	chr11:76534600-76536800	Enhancers	Lung	lung
37	chr11:76534600-76536800	Flanking Active TSS	NHEK	skin
38	chr11:76534600-76537200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:76534600-76537200	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr11:76534600-76537200	Enhancers	Spleen	Spleen
41	chr11:76534800-76536800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:76534800-76536800	Enhancers	Left Ventricle	heart
43	chr11:76534800-76537400	Enhancers	Adipose Nuclei	Adipose
44	chr11:76535000-76535400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr11:76535000-76535400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr11:76535000-76535400	Enhancers	Small Intestine	intestine
47	chr11:76535000-76535600	Flanking Active TSS	HUVEC	blood vessel
48	chr11:76535000-76536400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:76535200-76535400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr11:76535200-76535400	Flanking Active TSS	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links