Variant report

Variant	rs6592666
Chromosome Location	chr11:76529254-76529255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11236954	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11236960	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11236961	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11600737	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11607420	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12278208	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12278844	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1440976	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs56048519	0.91[ASN][1000 genomes]
rs61336866	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6592669	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6592670	0.97[ASN][1000 genomes]
rs7106688	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7122943	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7930972	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7932943	0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7942487	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7948381	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76528600-76530400	Weak transcription	Adipose Nuclei	Adipose
2	chr11:76529000-76530200	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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