Variant report

Variant	rs11236961
Chromosome Location	chr11:76540708-76540709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11236954	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600598	0.83[EUR][1000 genomes]
rs11600737	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607420	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11608202	0.83[EUR][1000 genomes]
rs12278208	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278844	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440976	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28407842	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56048519	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57918050	0.87[EUR][1000 genomes]
rs61336866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592666	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6592669	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592670	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7106688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122943	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7128590	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7930972	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7932943	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7942487	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7948381	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76535200-76541400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:76535400-76546400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:76535400-76549000	Weak transcription	Small Intestine	intestine
4	chr11:76536400-76544600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:76536800-76547800	Weak transcription	Left Ventricle	heart
6	chr11:76537200-76541200	Weak transcription	Placenta	Placenta
7	chr11:76537200-76547200	Weak transcription	Spleen	Spleen
8	chr11:76537400-76541400	Weak transcription	Adipose Nuclei	Adipose
9	chr11:76537400-76541600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:76537400-76541600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:76537400-76541600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:76537400-76541600	Weak transcription	NHEK	skin
13	chr11:76537400-76541800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:76537400-76541800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:76537400-76547000	Weak transcription	Hela-S3	cervix
16	chr11:76540600-76542200	Enhancers	Lung	lung
17	chr11:76540600-76542200	Enhancers	K562	blood

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