Variant report

Variant	rs11608202
Chromosome Location	chr11:76622410-76622411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76571447..76573312-chr11:76621131..76624042,2	MCF-7	breast:
2	chr11:76621301..76624414-chr11:76626664..76629602,3	K562	blood:
3	chr11:76570999..76573414-chr11:76621692..76624473,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11236954	0.83[EUR][1000 genomes]
rs11236960	0.83[EUR][1000 genomes]
rs11236961	0.83[EUR][1000 genomes]
rs11600598	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11600737	0.83[EUR][1000 genomes]
rs11600914	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11603154	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11607420	0.83[EUR][1000 genomes]
rs12278208	0.83[EUR][1000 genomes]
rs12278844	0.83[EUR][1000 genomes]
rs1440976	0.83[EUR][1000 genomes]
rs56048519	0.83[EUR][1000 genomes]
rs57918050	0.87[EUR][1000 genomes]
rs6592669	0.83[EUR][1000 genomes]
rs6592670	0.83[EUR][1000 genomes]
rs7106688	0.83[EUR][1000 genomes]
rs7122943	0.83[EUR][1000 genomes]
rs7128590	0.83[EUR][1000 genomes]
rs7930972	0.83[EUR][1000 genomes]
rs7932943	0.83[EUR][1000 genomes]
rs7942487	0.83[EUR][1000 genomes]
rs7948381	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:76608800-76622600	Weak transcription	Left Ventricle	heart
3	chr11:76613600-76631200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:76613800-76622600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:76615600-76631200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:76617800-76630000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:76617800-76630000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:76618200-76637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:76618600-76629800	Weak transcription	A549	lung
10	chr11:76618600-76630000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:76621400-76624200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:76621600-76622800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:76622000-76622600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:76622000-76622800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr11:76622000-76622800	Enhancers	K562	blood
16	chr11:76622000-76623000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr11:76622000-76623200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:76622000-76623400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:76622200-76622600	Enhancers	Fetal Stomach	stomach
20	chr11:76622200-76622600	Enhancers	Ovary	ovary
21	chr11:76622200-76622600	Enhancers	Small Intestine	intestine
22	chr11:76622200-76622800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr11:76622200-76622800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:76622200-76622800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:76622200-76623400	Enhancers	Right Atrium	heart
26	chr11:76622400-76622600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:76622400-76622600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:76622400-76622600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:76622400-76622600	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr11:76622400-76622600	Enhancers	Spleen	Spleen
31	chr11:76622400-76622800	Flanking Active TSS	NHDF-Ad	bronchial
32	chr11:76622400-76622800	Enhancers	NHLF	lung
33	chr11:76622400-76623000	Enhancers	HUES48 Cell Line	embryonic stem cell

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