Variant report

Variant	rs7948381
Chromosome Location	chr11:76533817-76533818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76531797..76536472-chr11:76570745..76574159,6	MCF-7	breast:
2	chr11:76529538..76531213-chr11:76532153..76533860,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11236954	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236960	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236961	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600598	0.83[EUR][1000 genomes]
rs11600737	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11608202	0.83[EUR][1000 genomes]
rs12278208	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278844	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28407842	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56048519	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57918050	0.87[EUR][1000 genomes]
rs61336866	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592666	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6592669	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592670	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7106688	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7128590	1.00[EUR][1000 genomes]
rs7930972	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7932943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7942487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3332513	chr11:76533354-76535352	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76531600-76534400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:76531800-76534400	Weak transcription	Adipose Nuclei	Adipose
3	chr11:76531800-76534600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:76533400-76534000	Flanking Active TSS	K562	blood
5	chr11:76533400-76534600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr11:76533600-76534400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:76533600-76534400	Enhancers	A549	lung
8	chr11:76533600-76534400	Enhancers	HUVEC	blood vessel
9	chr11:76533600-76534600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:76533600-76534600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:76533600-76534600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:76533600-76534600	Enhancers	NH-A	brain
13	chr11:76533600-76534600	Enhancers	NHEK	skin
14	chr11:76533600-76537400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:76533600-76537400	Enhancers	HMEC	breast
16	chr11:76533800-76534200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:76533800-76534400	Enhancers	Hela-S3	cervix
18	chr11:76533800-76536000	Weak transcription	GM12878-XiMat	blood
19	chr11:76533800-76537000	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links