Variant report

Variant	rs11606745
Chromosome Location	chr11:86174277-86174278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86171384..86173382-chr11:86174243..86177656,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10898485	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10898498	1.00[JPT][hapmap]
rs11234665	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11234689	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11494275	1.00[JPT][hapmap]
rs11607733	1.00[JPT][hapmap]
rs12222272	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12364541	1.00[JPT][hapmap]
rs12797575	1.00[JPT][hapmap]
rs12797615	1.00[JPT][hapmap]
rs1945043	1.00[JPT][hapmap]
rs2051434	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs4943943	1.00[JPT][hapmap]
rs4944592	1.00[JPT][hapmap]
rs58410116	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72953621	0.82[AMR][1000 genomes]
rs7934133	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86153200-86187000	Weak transcription	Fetal Kidney	kidney
2	chr11:86157000-86179800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:86158600-86187200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:86159600-86196800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:86160200-86221000	Weak transcription	Primary T cells from cord blood	blood
6	chr11:86168200-86175600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:86169400-86174800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:86169800-86176200	Enhancers	NHEK	skin
9	chr11:86169800-86178400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:86170200-86187200	Weak transcription	Stomach Mucosa	stomach
11	chr11:86170800-86174600	Strong transcription	Fetal Intestine Small	intestine
12	chr11:86171200-86197800	Weak transcription	Esophagus	oesophagus
13	chr11:86171600-86175400	Weak transcription	Psoas Muscle	Psoas
14	chr11:86171600-86180400	Weak transcription	Gastric	stomach
15	chr11:86171800-86175600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:86171800-86187200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:86171800-86188800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:86172000-86176800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:86172000-86180600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:86172200-86175400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:86172200-86176000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:86172200-86177400	Weak transcription	NHLF	lung
23	chr11:86172200-86180600	Weak transcription	Osteobl	bone
24	chr11:86172200-86181000	Weak transcription	NHDF-Ad	bronchial
25	chr11:86172200-86184800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:86172200-86208200	Weak transcription	Pancreas	Pancrea
27	chr11:86172400-86179000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:86172400-86183400	Weak transcription	Fetal Heart	heart
29	chr11:86172400-86192800	Weak transcription	Brain Anterior Caudate	brain
30	chr11:86172400-86208400	Weak transcription	Brain Angular Gyrus	brain
31	chr11:86172400-86227000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:86172600-86180400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:86172600-86180600	Weak transcription	Fetal Lung	lung
34	chr11:86172600-86180800	Weak transcription	Right Ventricle	heart
35	chr11:86172600-86184600	Weak transcription	HSMM	muscle
36	chr11:86172600-86187200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:86172600-86194800	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:86172800-86174600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:86172800-86174600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:86172800-86174600	Strong transcription	Fetal Stomach	stomach
41	chr11:86172800-86175400	Strong transcription	Brain Germinal Matrix	brain
42	chr11:86172800-86175400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:86172800-86175400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:86172800-86175400	Weak transcription	HSMMtube	muscle
45	chr11:86172800-86179000	Weak transcription	Right Atrium	heart
46	chr11:86172800-86180400	Weak transcription	Fetal Muscle Leg	muscle
47	chr11:86172800-86180800	Weak transcription	Spleen	Spleen
48	chr11:86172800-86184800	Weak transcription	HUVEC	blood vessel
49	chr11:86172800-86188800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:86173200-86176200	Strong transcription	Ovary	ovary

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