Variant report

Variant	rs12797575
Chromosome Location	chr11:86275905-86275906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10898498	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898499	1.00[ASN][1000 genomes]
rs11234696	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11494275	1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606745	1.00[JPT][hapmap]
rs11607733	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12364541	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12797615	1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1379872	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1945043	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34249558	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4943943	1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4943945	0.93[ASN][1000 genomes]
rs4944592	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934133	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86263400-86288200	Weak transcription	Aorta	Aorta
2	chr11:86265000-86278800	Weak transcription	Pancreas	Pancrea
3	chr11:86266400-86278200	Weak transcription	A549	lung
4	chr11:86270400-86276400	Weak transcription	Fetal Brain Female	brain
5	chr11:86270400-86281200	Weak transcription	Colonic Mucosa	Colon
6	chr11:86270600-86276400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:86271000-86276000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:86271000-86276200	Weak transcription	Fetal Stomach	stomach
9	chr11:86271000-86276200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:86271000-86276800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:86271000-86277000	Weak transcription	Lung	lung
12	chr11:86271000-86277800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:86271000-86278000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:86271000-86279600	Weak transcription	Left Ventricle	heart
15	chr11:86271000-86285400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:86271000-86285400	Weak transcription	Right Atrium	heart
17	chr11:86271000-86285600	Weak transcription	Right Ventricle	heart
18	chr11:86271000-86291200	Weak transcription	Gastric	stomach
19	chr11:86271400-86277000	Weak transcription	Ovary	ovary
20	chr11:86272200-86278200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:86272400-86285600	Weak transcription	Psoas Muscle	Psoas
22	chr11:86275400-86299400	Weak transcription	Primary hematopoietic stem cells	blood

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