Variant report

Variant	rs11608094
Chromosome Location	chr11:67073532-67073533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67071730..67073534-chr11:67162398..67164599,2	MCF-7	breast:
2	chr11:67071359..67073756-chr16:3070064..3072908,2	MCF-7	breast:
3	chr11:67071096..67073778-chr17:56708400..56710426,2	MCF-7	breast:
4	chr11:67054455..67063331-chr11:67064649..67075279,24	K562	blood:

Variant related genes	Relation type
ENSG00000172613	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000253024	Chromatin interaction
ENSG00000006327	Chromatin interaction
ENSG00000184697	Chromatin interaction
ENSG00000172932	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10896167	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10896168	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896169	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11601700	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12788752	0.81[AMR][1000 genomes]
rs1540135	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1638566	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1638567	0.82[AMR][1000 genomes]
rs1638571	0.82[AMR][1000 genomes]
rs1638574	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1790740	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2071007	0.82[AMR][1000 genomes]
rs2429460	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2429462	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2514258	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3781941	0.82[AMR][1000 genomes]
rs3781942	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3781943	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3909168	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4255546	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4930197	0.82[AMR][1000 genomes]
rs56337023	0.82[AMR][1000 genomes]
rs7106352	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv897800	chr11:67024534-67086298	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
7	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
9	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
10	nsv897802	chr11:67051245-67075024	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
11	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
12	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
13	nsv897803	chr11:67067075-67084761	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67069200-67073600	Weak transcription	GM12878-XiMat	blood
2	chr11:67069200-67079200	Weak transcription	K562	blood
3	chr11:67070200-67084400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:67070400-67083800	Weak transcription	Dnd41	blood
5	chr11:67071800-67084400	Weak transcription	Fetal Kidney	kidney
6	chr11:67072000-67075600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:67072000-67080000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:67072000-67084000	Weak transcription	HUVEC	blood vessel
9	chr11:67072200-67075200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:67072200-67076800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:67072200-67079800	Weak transcription	Primary T cells from cord blood	blood
12	chr11:67072200-67084000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:67072200-67084000	Weak transcription	Brain Germinal Matrix	brain
14	chr11:67072200-67084400	Weak transcription	Fetal Brain Female	brain
15	chr11:67072400-67074000	Weak transcription	NHEK	skin
16	chr11:67072400-67074200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:67072400-67074200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:67072400-67074400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:67072400-67074400	Weak transcription	Liver	Liver
20	chr11:67072400-67074400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:67072400-67074400	Weak transcription	NHLF	lung
22	chr11:67072400-67074600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:67072400-67074600	Weak transcription	Fetal Lung	lung
24	chr11:67072400-67074600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:67072400-67074800	Weak transcription	Brain Angular Gyrus	brain
26	chr11:67072400-67075000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:67072400-67075400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:67072400-67075800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:67072400-67075800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:67072400-67076000	Weak transcription	Brain Anterior Caudate	brain
31	chr11:67072400-67076400	Weak transcription	Osteobl	bone
32	chr11:67072400-67076600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:67072400-67077200	Weak transcription	Left Ventricle	heart
34	chr11:67072400-67077600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:67072400-67078400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:67072400-67079800	Strong transcription	Fetal Intestine Small	intestine
37	chr11:67072400-67080000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:67072400-67084400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:67072400-67084400	Weak transcription	HSMMtube	muscle
40	chr11:67072400-67084400	Weak transcription	NHDF-Ad	bronchial
41	chr11:67072400-67084600	Weak transcription	Small Intestine	intestine
42	chr11:67072600-67073800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:67072600-67073800	Weak transcription	Pancreas	Pancrea
44	chr11:67072600-67074000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:67072600-67074200	Weak transcription	Colonic Mucosa	Colon
46	chr11:67072600-67074200	Weak transcription	Gastric	stomach
47	chr11:67072600-67074200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:67072600-67074400	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:67072600-67074400	Weak transcription	Lung	lung
50	chr11:67072600-67074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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