Variant report

Variant	rs4255546
Chromosome Location	chr11:67070766-67070767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr11:67070523-67071218	Hela-S3	cervix:	n/a	chr11:67070827-67070837
2	POLR2A	chr11:67070551-67071294	A549	lung:	n/a	n/a
3	TFAP2A	chr11:67069663-67071991	Hela-S3	cervix:	n/a	chr11:67071564-67071575 chr11:67071268-67071276 chr11:67071663-67071671 chr11:67071564-67071575 chr11:67071907-67071919 chr11:67070800-67070815 chr11:67071564-67071575 chr11:67071268-67071276 chr11:67071269-67071277 chr11:67071564-67071575 chr11:67071229-67071240 chr11:67070833-67070845 chr11:67071663-67071671 chr11:67071269-67071277 chr11:67070302-67070314 chr11:67071269-67071277 chr11:67071268-67071276 chr11:67071663-67071671
4	TFAP2C	chr11:67069594-67071982	Hela-S3	cervix:	n/a	chr11:67070859-67070874 chr11:67071563-67071578
5	POLR2A	chr11:67070765-67071272	GM12878	blood:	n/a	n/a
6	CTBP2	chr11:67069708-67071107	H1-hESC	embryonic stem cell:	n/a	n/a
7	YY1	chr11:67070605-67071327	HepG2	liver:	n/a	chr11:67070866-67070877
8	POLR2A	chr11:67070460-67070789	GM12891	blood:	n/a	n/a
9	BCL3	chr11:67069961-67070895	A549	lung:	n/a	chr11:67070002-67070010 chr11:67070419-67070428 chr11:67070828-67070841
10	CREB1	chr11:67070135-67071358	A549	lung:	n/a	n/a
11	TCF12	chr11:67069552-67071878	ECC-1	luminal epithelium:	n/a	chr11:67070822-67070829
12	MAX	chr11:67070088-67071284	A549	lung:	n/a	chr11:67070837-67070847 chr11:67070159-67070170 chr11:67070272-67070283 chr11:67070272-67070282 chr11:67070155-67070174 chr11:67070158-67070171 chr11:67070158-67070171 chr11:67070273-67070282 chr11:67070271-67070280 chr11:67070273-67070283 chr11:67070274-67070281 chr11:67071259-67071269 chr11:67070158-67070171 chr11:67070160-67070169 chr11:67070160-67070169
13	MAZ	chr11:67069497-67072451	IMR90	lung:	n/a	chr11:67070837-67070847 chr11:67070159-67070170 chr11:67070272-67070283 chr11:67070272-67070282 chr11:67070155-67070174 chr11:67070158-67070171 chr11:67071385-67071395 chr11:67070158-67070171 chr11:67070273-67070282 chr11:67070271-67070280 chr11:67071867-67071883 chr11:67070274-67070281 chr11:67071259-67071269 chr11:67070158-67070171 chr11:67070160-67070169 chr11:67070160-67070169
14	POLR2A	chr11:67069431-67072015	MCF-7	breast:	n/a	n/a
15	POLR2A	chr11:67069503-67071556	PANC-1	pancreas:	n/a	n/a
16	EGR1	chr11:67070146-67071925	MCF-7	breast:	n/a	chr11:67071186-67071196 chr11:67071184-67071198 chr11:67071185-67071198 chr11:67071186-67071197 chr11:67071180-67071202 chr11:67070419-67070428 chr11:67071186-67071197 chr11:67071185-67071198 chr11:67070906-67070916 chr11:67071185-67071198 chr11:67071186-67071195 chr11:67071184-67071199 chr11:67070833-67070846 chr11:67071186-67071196 chr11:67071187-67071196
17	EP300	chr11:67070615-67071065	T-47D	breast:	n/a	chr11:67070815-67070831
18	TCF7L2	chr11:67070738-67070979	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr11:67069981-67071411	U87	brain:	n/a	n/a
20	SP1	chr11:67070654-67071324	A549	lung:	n/a	chr11:67070896-67070908 chr11:67071042-67071056 chr11:67070898-67070907 chr11:67070897-67070907 chr11:67070830-67070842 chr11:67070830-67070842 chr11:67070897-67070906 chr11:67070893-67070907 chr11:67070898-67070907 chr11:67070896-67070908 chr11:67070897-67070907 chr11:67070832-67070841
21	POLR2A	chr11:67069946-67071695	HepG2	liver:	n/a	n/a
22	POLR2A	chr11:67069889-67071231	K562	blood:	n/a	n/a
23	CCNT2	chr11:67070659-67071153	K562	blood:	n/a	chr11:67070897-67070906
24	ELK4	chr11:67069837-67070875	Hela-S3	cervix:	n/a	chr11:67070417-67070428
25	POLR2A	chr11:67070053-67071244	U87	brain:	n/a	n/a
26	POLR2A	chr11:67069836-67071384	GM12892	blood:	n/a	n/a
27	SP4	chr11:67070631-67071013	H1-hESC	embryonic stem cell:	n/a	chr11:67070894-67070910
28	EGR1	chr11:67070643-67071480	ECC-1	luminal epithelium:	n/a	chr11:67071186-67071196 chr11:67071184-67071198 chr11:67071185-67071198 chr11:67071186-67071197 chr11:67071180-67071202 chr11:67071186-67071197 chr11:67071185-67071198 chr11:67070906-67070916 chr11:67071185-67071198 chr11:67071186-67071195 chr11:67071184-67071199 chr11:67070833-67070846 chr11:67071186-67071196 chr11:67071187-67071196
29	MXI1	chr11:67069673-67071082	Hela-S3	cervix:	n/a	n/a
30	JUND	chr11:67070106-67071268	A549	lung:	n/a	n/a
31	EP300	chr11:67070720-67071835	ECC-1	luminal epithelium:	n/a	chr11:67070815-67070831
32	POLR2A	chr11:67070543-67071273	A549	lung:	n/a	n/a
33	POLR2A	chr11:67069978-67070771	GM12891	blood:	n/a	n/a
34	HDAC2	chr11:67070344-67071975	MCF-7	breast:	n/a	n/a
35	ZEB1	chr11:67070065-67071322	HepG2	liver:	n/a	chr11:67071072-67071083 chr11:67071071-67071083 chr11:67070822-67070833
36	POLR2A	chr11:67070669-67071231	HepG2	liver:	n/a	n/a
37	SMARCC1	chr11:67069862-67071742	Hela-S3	cervix:	n/a	n/a
38	MAZ	chr11:67070280-67071746	Hela-S3	cervix:	n/a	chr11:67070837-67070847 chr11:67071385-67071395 chr11:67071259-67071269
39	POLR2A	chr11:67070582-67071906	ProgFib	skin:	n/a	n/a
40	POLR2A	chr11:67070062-67071360	K562	blood:	n/a	n/a
41	EGR1	chr11:67070389-67071783	HCT-116	colon:	n/a	chr11:67071186-67071196 chr11:67071184-67071198 chr11:67071185-67071198 chr11:67071186-67071197 chr11:67071180-67071202 chr11:67070419-67070428 chr11:67071186-67071197 chr11:67071185-67071198 chr11:67070906-67070916 chr11:67071185-67071198 chr11:67071186-67071195 chr11:67071184-67071199 chr11:67070833-67070846 chr11:67071186-67071196 chr11:67071187-67071196
42	MAX	chr11:67069649-67071177	Hela-S3	cervix:	n/a	chr11:67070837-67070847 chr11:67070159-67070170 chr11:67070272-67070283 chr11:67070272-67070282 chr11:67070155-67070174 chr11:67070158-67070171 chr11:67070158-67070171 chr11:67070273-67070282 chr11:67070271-67070280 chr11:67070273-67070283 chr11:67070274-67070281 chr11:67070158-67070171 chr11:67070160-67070169 chr11:67070160-67070169
43	SRF	chr11:67070435-67071853	MCF-7	breast:	n/a	chr11:67070953-67070968 chr11:67070954-67070968 chr11:67071770-67071780 chr11:67070896-67070906 chr11:67070929-67070939
44	HCFC1	chr11:67069197-67071946	Hela-S3	cervix:	n/a	n/a
45	MAX	chr11:67070574-67071980	MCF-7	breast:	n/a	chr11:67070837-67070847 chr11:67071385-67071395 chr11:67071867-67071883 chr11:67071259-67071269
46	PBX3	chr11:67069555-67071336	A549	lung:	n/a	n/a
47	NR2F2	chr11:67070007-67071947	MCF-7	breast:	n/a	n/a
48	SIN3AK20	chr11:67070450-67071964	MCF-7	breast:	n/a	n/a
49	MAX	chr11:67069587-67071781	ECC-1	luminal epithelium:	n/a	chr11:67070837-67070847 chr11:67070159-67070170 chr11:67070272-67070283 chr11:67070272-67070282 chr11:67070155-67070174 chr11:67070158-67070171 chr11:67071385-67071395 chr11:67070158-67070171 chr11:67070273-67070282 chr11:67070271-67070280 chr11:67070273-67070283 chr11:67070274-67070281 chr11:67071259-67071269 chr11:67070158-67070171 chr11:67070160-67070169 chr11:67070160-67070169
50	MAX	chr11:67069993-67072149	A549	lung:	n/a	chr11:67070837-67070847 chr11:67070159-67070170 chr11:67070272-67070283 chr11:67070272-67070282 chr11:67070155-67070174 chr11:67070158-67070171 chr11:67071385-67071395 chr11:67070158-67070171 chr11:67070273-67070282 chr11:67070271-67070280 chr11:67071867-67071883 chr11:67070273-67070283 chr11:67070274-67070281 chr11:67071259-67071269 chr11:67070158-67070171 chr11:67070160-67070169 chr11:67070160-67070169

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:67070738-67070788	PFSK-1	brain:	n/a
2	chr11:67070738-67070788	BJ	skin:	n/a
3	chr11:67070756-67070806	SK-N-SH	brain:	n/a
4	chr11:67070738-67070788	SK-N-MC	brain:	n/a
5	chr11:67070746-67070796	Jurkat	blood:	n/a
6	chr11:67070756-67070806	GM12891	blood:	n/a
7	chr11:67070756-67070806	HL-60	blood:	n/a
8	chr11:67070746-67070796	LNCaP	prostate:	n/a
9	chr11:67070746-67070796	HCPEpiC	choroid plexus:	n/a
10	chr11:67070746-67070796	NHDF-neo	bronchial:	n/a
11	chr11:67070746-67070796	NT2-D1	testis:	n/a
12	chr11:67070746-67070796	ovcar-3	ovarian:	n/a
13	chr11:67070756-67070806	NH-A	brain:	n/a
14	chr11:67070760-67070810	AG04450	lung:	fetal
15	chr11:67070738-67070788	HNPCEpiC	eye:	n/a
16	chr11:67070738-67070788	AG09309	skin:	n/a
17	chr11:67070746-67070796	MCF10A-Er-Src	breast:	n/a
18	chr11:67070738-67070788	LNCaP	prostate:	n/a
19	chr11:67070746-67070796	HCT-116	colon:	n/a
20	chr11:67070760-67070810	PANC-1	pancreas:	n/a
21	chr11:67070756-67070806	HAEpiC	amniotic membrane:	n/a
22	chr11:67070760-67070810	A549	lung:	n/a
23	chr11:67070756-67070806	HEK293	kidney:	embryo
24	chr11:67070760-67070810	PrEC	prostate:	n/a
25	chr11:67070760-67070810	ovcar-3	ovarian:	n/a
26	chr11:67070760-67070810	HCM	heart:	n/a
27	chr11:67070746-67070796	HepG2	liver:	n/a
28	chr11:67070738-67070788	SK-N-SH	brain:	n/a
29	chr11:67070746-67070796	HEEpiC	esophagus:	n/a
30	chr11:67070756-67070806	MCF-7	breast:	n/a
31	chr11:67070760-67070810	GM06990	blood:	n/a
32	chr11:67070760-67070810	Jurkat	blood:	n/a
33	chr11:67070760-67070810	Caco-2	colon:	n/a
34	chr11:67070760-67070810	HNPCEpiC	eye:	n/a
35	chr11:67070738-67070788	NT2-D1	testis:	n/a
36	chr11:67070756-67070806	HUVEC	blood vessel:	n/a
37	chr11:67070756-67070806	NT2-D1	testis:	n/a
38	chr11:67070738-67070788	NH-A	brain:	n/a
39	chr11:67070756-67070806	HEEpiC	esophagus:	n/a
40	chr11:67070756-67070806	ProgFib	skin:	n/a
41	chr11:67070760-67070810	NHBE	bronchial:	n/a
42	chr11:67070760-67070810	GM12891	blood:	n/a
43	chr11:67070756-67070806	AG10803	skin:	n/a
44	chr11:67070760-67070810	PFSK-1	brain:	n/a
45	chr11:67070760-67070810	NHDF-neo	bronchial:	n/a
46	chr11:67070756-67070806	SK-N-MC	brain:	n/a
47	chr11:67070756-67070806	T-47D	breast:	n/a
48	chr11:67070746-67070796	BE2_C	brain:	n/a
49	chr11:67070756-67070806	ECC-1	luminal epithelium:	n/a
50	chr11:67070756-67070806	AoSMC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:10830046..10830717-chr11:67070337..67070933,2	Hela-S3	cervix:
2	chr11:67069460..67071861-chr11:67118830..67121727,4	MCF-7	breast:
3	chr11:67069246..67073295-chr11:67139634..67145393,8	MCF-7	breast:
4	chr11:67070027..67071819-chr11:67270841..67273414,2	MCF-7	breast:
5	chr11:67069872..67072644-chr11:67140515..67142125,2	K562	blood:
6	chr11:67070466..67072644-chr11:67139702..67142015,2	K562	blood:
7	chr11:67069155..67071597-chr11:67234852..67239277,5	MCF-7	breast:
8	chr11:67054455..67063331-chr11:67064649..67075279,24	K562	blood:
9	chr11:67070042..67072610-chr11:67159168..67161895,3	MCF-7	breast:
10	chr11:67069791..67071479-chr19:39339670..39341309,2	MCF-7	breast:
11	chr11:67069948..67073118-chr11:67121673..67124639,3	MCF-7	breast:
12	chr11:67069839..67071996-chr11:67139740..67141397,2	MCF-7	breast:
13	chr11:67069895..67070875-chr22:36023878..36024555,2	HCT-116	colon:

Variant related genes	Relation type
SSH3	TF binding region
SSH3	CpG island
ENSG00000104824	Chromatin interaction
ENSG00000172932	Chromatin interaction
ENSG00000175505	Chromatin interaction
ENSG00000110321	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000256514	Chromatin interaction
ENSG00000172663	Chromatin interaction
ENSG00000172613	Chromatin interaction
ENSG00000110697	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10896167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896168	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10896169	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11227756	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11227788	0.82[ASN][1000 genomes]
rs11601700	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11608094	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12288107	0.82[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs12290164	0.82[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap]
rs12788752	0.88[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.88[AMR][1000 genomes]
rs12791853	0.83[GIH][hapmap]
rs1540135	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1558256	0.92[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes]
rs1638566	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1638567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1638571	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1638574	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1638586	0.83[GIH][hapmap];0.86[MEX][hapmap]
rs1790733	0.82[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs1790740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1790747	0.82[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs2066496	0.88[CEU][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.84[JPT][hapmap]
rs2071007	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2256154	0.92[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2286620	0.88[CEU][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap]
rs2298815	0.83[GIH][hapmap]
rs2429460	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2429462	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2514256	0.88[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.83[ASN][1000 genomes]
rs2514258	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3737460	0.83[GIH][hapmap]
rs3758943	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs3781941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3781942	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3781943	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3909168	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3927807	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[EUR][1000 genomes]
rs4024520	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4244819	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4375446	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4478996	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs4542419	0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[TSI][hapmap]
rs4930192	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4930197	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4930418	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56337023	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs660960	0.92[CHB][hapmap]
rs674499	0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7106352	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7480390	0.88[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs872109	0.83[ASN][1000 genomes]
rs872110	0.88[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv897799	chr11:67024534-67072623	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv897800	chr11:67024534-67086298	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
8	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
9	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
10	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
11	nsv897802	chr11:67051245-67075024	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
12	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
13	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
14	nsv897803	chr11:67067075-67084761	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4255546	RPS6KB2	cis	lymphoblastoid	seeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67067000-67072600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:67067800-67071000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:67069200-67073600	Weak transcription	GM12878-XiMat	blood
4	chr11:67069200-67079200	Weak transcription	K562	blood
5	chr11:67069400-67070800	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr11:67069400-67070800	Flanking Active TSS	Liver	Liver
7	chr11:67069400-67071600	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr11:67069400-67072400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:67069600-67070800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr11:67069600-67071800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:67069600-67072200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr11:67069600-67072400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr11:67069800-67071400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr11:67069800-67071800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr11:67069800-67072000	Bivalent Enhancer	Fetal Brain Male	brain
16	chr11:67069800-67072200	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr11:67070000-67070800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:67070000-67070800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr11:67070000-67070800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:67070000-67070800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:67070000-67070800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:67070000-67070800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:67070000-67070800	Flanking Active TSS	Brain Angular Gyrus	brain
24	chr11:67070000-67070800	Flanking Active TSS	Fetal Muscle Trunk	muscle
25	chr11:67070000-67070800	Flanking Active TSS	Fetal Muscle Leg	muscle
26	chr11:67070000-67070800	Flanking Active TSS	Rectal Smooth Muscle	rectum
27	chr11:67070000-67070800	Flanking Active TSS	HSMM	muscle
28	chr11:67070000-67070800	Flanking Active TSS	HSMMtube	muscle
29	chr11:67070000-67071600	Active TSS	Lung	lung
30	chr11:67070000-67072200	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr11:67070000-67072400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:67070000-67072400	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr11:67070200-67070800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:67070200-67070800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:67070200-67070800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr11:67070200-67070800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:67070200-67070800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr11:67070200-67070800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr11:67070200-67071000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr11:67070200-67071800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:67070200-67072000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:67070200-67072200	Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr11:67070200-67072200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr11:67070200-67084400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:67070400-67070800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:67070400-67070800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:67070400-67070800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:67070400-67070800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
49	chr11:67070400-67070800	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr11:67070400-67070800	Genic enhancers	Primary B cells from peripheral blood	blood

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