Variant report

Variant	rs660960
Chromosome Location	chr11:66967597-66967598
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10791899	0.81[AMR][1000 genomes]
rs10896154	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs10896167	0.92[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs11227756	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs11601700	0.84[EUR][1000 genomes]
rs1253778	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12788752	0.83[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap]
rs1638566	0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap]
rs1638567	0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap]
rs1638571	0.85[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs1790740	0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap]
rs2001635	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes]
rs2001636	0.85[AMR][1000 genomes]
rs2071007	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3758943	0.80[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.94[YRI][hapmap]
rs3781941	0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap]
rs3781942	0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap]
rs3781943	0.92[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs3927807	0.80[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4244819	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4255546	0.92[CHB][hapmap]
rs4375446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4478996	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4503557	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4542419	0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4930192	0.82[EUR][1000 genomes]
rs4930197	0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs56337023	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs608273	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs646834	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6591232	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6591239	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs674499	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113390	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7484186	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7930829	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs872110	0.85[CHB][hapmap];0.86[YRI][hapmap]
rs9943601	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
2	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
4	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
5	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:66948000-66970600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:66948200-66975000	Weak transcription	Right Ventricle	heart
9	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:66949600-66975000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:66951200-66975000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:66951200-66975000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
14	chr11:66951600-66968000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:66953000-66975000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:66953400-66982800	Weak transcription	Aorta	Aorta
17	chr11:66953400-66982800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:66953600-66968000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:66953800-66978400	Weak transcription	K562	blood
20	chr11:66953800-66982800	Weak transcription	HUVEC	blood vessel
21	chr11:66954000-66974600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:66954000-66976000	Weak transcription	Brain Substantia Nigra	brain
23	chr11:66954000-66979400	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:66954000-66984800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:66954400-66967600	Weak transcription	Brain Anterior Caudate	brain
26	chr11:66954400-66974600	Weak transcription	Brain Germinal Matrix	brain
27	chr11:66954600-66993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:66954800-66975000	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:66956000-66975000	Weak transcription	Spleen	Spleen
30	chr11:66956400-67005000	Weak transcription	Fetal Heart	heart
31	chr11:66959000-66970400	Strong transcription	Primary T cells from cord blood	blood
32	chr11:66959600-66968200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:66959600-66969000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:66961000-66969400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:66961200-66969400	Strong transcription	Placenta	Placenta
36	chr11:66961400-66968000	Weak transcription	Gastric	stomach
37	chr11:66962200-66999000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:66962400-66982800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:66962600-66967800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:66962600-66967800	Weak transcription	Ovary	ovary
41	chr11:66962600-66972600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:66962600-66974400	Weak transcription	NH-A	brain
43	chr11:66962600-66995000	Weak transcription	Psoas Muscle	Psoas
44	chr11:66962800-66977400	Weak transcription	Esophagus	oesophagus
45	chr11:66963000-66968000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:66963400-66967600	Strong transcription	Primary B cells from cord blood	blood
47	chr11:66963400-66969000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr11:66963800-66969800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:66963800-66974400	Weak transcription	NHLF	lung
50	chr11:66963800-66978400	Weak transcription	HSMMtube	muscle

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