Variant report

Variant	rs7484186
Chromosome Location	chr11:66878129-66878130
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66847116..66849049-chr11:66877078..66878803,2	MCF-7	breast:
2	chr11:66873988..66875768-chr11:66877376..66880066,2	MCF-7	breast:
3	chr11:66876534..66882165-chr11:66883404..66887413,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10791899	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10896154	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1253778	0.87[AMR][1000 genomes]
rs2001635	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2001636	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2071007	0.81[ASN][1000 genomes]
rs3927807	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4244819	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4375446	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4478996	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4503557	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4542419	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56337023	0.82[ASN][1000 genomes]
rs608273	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs646834	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6591232	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6591239	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs660960	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs674499	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7113390	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7930829	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9943601	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66867800-66880800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66871600-66884200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66871800-66880400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:66873600-66880400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:66873800-66878400	Weak transcription	Fetal Heart	heart
6	chr11:66873800-66878800	Weak transcription	Right Atrium	heart
7	chr11:66874200-66878400	Weak transcription	Fetal Thymus	thymus
8	chr11:66874600-66878600	Weak transcription	GM12878-XiMat	blood
9	chr11:66875400-66882600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:66875600-66880600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:66875600-66880600	Weak transcription	K562	blood
12	chr11:66876200-66878400	Weak transcription	HepG2	liver
13	chr11:66876600-66878400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:66876800-66882600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:66878000-66878800	Enhancers	Fetal Muscle Trunk	muscle

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