Variant report

Variant	rs10896154
Chromosome Location	chr11:66870000-66870001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66868018..66871206-chr11:66883775..66886927,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10791899	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896167	0.88[CEU][hapmap];0.92[CHB][hapmap];0.86[YRI][hapmap]
rs11227756	0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs1253778	0.80[AMR][1000 genomes]
rs2001635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2001636	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2071007	0.92[CHB][hapmap];0.93[YRI][hapmap]
rs3927807	0.89[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap]
rs4244819	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4375446	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4478996	0.88[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4542419	0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs608273	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs646834	0.88[AMR][1000 genomes]
rs6591232	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs660960	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs674499	0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs7484186	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7930829	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9943601	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv975118	chr11:66862674-66874347	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66863000-66870600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:66863000-66871200	Weak transcription	K562	blood
3	chr11:66866600-66871400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:66867000-66873400	Weak transcription	Right Atrium	heart
5	chr11:66867800-66880800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:66868000-66870000	Weak transcription	Thymus	Thymus
7	chr11:66868000-66871000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:66868000-66871200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:66868000-66871200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:66868000-66871400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:66868200-66870200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr11:66868200-66870200	Weak transcription	Fetal Thymus	thymus
13	chr11:66868200-66870400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:66868200-66871000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:66868200-66871000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:66868200-66871200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:66868400-66870200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:66868400-66871000	Weak transcription	Dnd41	blood
19	chr11:66868400-66871200	Weak transcription	Primary T cells from cord blood	blood
20	chr11:66868400-66871200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr11:66869600-66871200	Weak transcription	GM12878-XiMat	blood
22	chr11:66870000-66872200	Enhancers	Thymus	Thymus

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