Variant report

Variant	rs6591232
Chromosome Location	chr11:66920504-66920505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66912440..66914149-chr11:66918816..66921683,2	K562	blood:
2	chr11:66882735..66884511-chr11:66919392..66921298,2	MCF-7	breast:
3	chr11:66913392..66915681-chr11:66919440..66921256,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10791899	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10896154	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1253778	0.88[AMR][1000 genomes]
rs2001635	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2001636	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2071007	0.84[ASN][1000 genomes]
rs3927807	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4244819	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4375446	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4478996	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4503557	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4542419	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56337023	0.84[ASN][1000 genomes]
rs608273	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646834	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591239	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs660960	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs674499	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7113390	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7484186	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7930829	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9943601	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
4	chr11:66893200-66923000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:66893200-66923400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:66894400-66922400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:66895600-66922000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:66900400-66921200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr11:66900400-66933800	Weak transcription	Esophagus	oesophagus
10	chr11:66902400-66920600	Weak transcription	Ovary	ovary
11	chr11:66903000-66934000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:66903400-66925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:66904400-66922800	Weak transcription	Colonic Mucosa	Colon
14	chr11:66904400-66934000	Weak transcription	K562	blood
15	chr11:66904600-66928400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:66904800-66927200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:66904800-66930400	Weak transcription	Fetal Heart	heart
18	chr11:66905200-66924600	Strong transcription	Fetal Intestine Small	intestine
19	chr11:66905200-66925200	Weak transcription	Brain Anterior Caudate	brain
20	chr11:66905600-66950400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:66906200-66925600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:66906600-66925600	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:66907600-66922600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:66907800-66928600	Weak transcription	NHLF	lung
25	chr11:66907800-66953000	Weak transcription	Aorta	Aorta
26	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
27	chr11:66908800-66925400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:66910400-66923000	Strong transcription	Fetal Muscle Leg	muscle
29	chr11:66910600-66921400	Strong transcription	Primary T cells from cord blood	blood
30	chr11:66911600-66925400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:66912800-66921800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:66913200-66922400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr11:66913600-66922400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:66914000-66921400	Strong transcription	Dnd41	blood
35	chr11:66914400-66921400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:66914400-66929000	Weak transcription	Stomach Mucosa	stomach
37	chr11:66914800-66923000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:66915000-66923000	Strong transcription	Fetal Muscle Trunk	muscle
39	chr11:66916400-66922000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:66916600-66923000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr11:66916600-66923000	Strong transcription	Fetal Intestine Large	intestine
42	chr11:66916600-66924600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:66916800-66920800	Weak transcription	A549	lung
44	chr11:66917000-66923000	Strong transcription	Fetal Stomach	stomach
45	chr11:66917200-66920600	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:66917400-66921200	Strong transcription	Adipose Nuclei	Adipose
47	chr11:66917400-66922800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:66917600-66922800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:66918000-66922000	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:66918000-66922800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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