Variant report

Variant	rs116085946
Chromosome Location	chr4:87252447-87252448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv934210	chr4:87197339-87325578	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1011494	chr4:87221480-87257453	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv1007891	chr4:87230601-87252524	Strong transcription Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv461574	chr4:87239764-87279096	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv594788	chr4:87239764-87279096	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv3365263	chr4:87252358-87252848	Enhancers ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87239400-87254400	Weak transcription	Brain Hippocampus Middle	brain
2	chr4:87239400-87258600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:87242000-87270000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:87247600-87259600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:87247600-87273400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:87248200-87252600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:87250000-87257800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:87250200-87253200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:87251000-87252600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:87251400-87253000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:87251800-87252800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:87252000-87252800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:87252000-87253800	Enhancers	Brain Anterior Caudate	brain
14	chr4:87252200-87253000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr4:87252200-87253000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:87252200-87253000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:87252200-87253200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:87252200-87253800	Enhancers	Brain Cingulate Gyrus	brain
19	chr4:87252200-87254600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:87252400-87252600	Enhancers	Brain Angular Gyrus	brain
21	chr4:87252400-87252600	Enhancers	NHDF-Ad	bronchial
22	chr4:87252400-87252600	Enhancers	NHLF	lung
23	chr4:87252400-87252800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:87252400-87252800	Enhancers	Brain Substantia Nigra	brain
25	chr4:87252400-87252800	Enhancers	Fetal Lung	lung
26	chr4:87252400-87253000	Enhancers	Fetal Kidney	kidney
27	chr4:87252400-87253000	Enhancers	NHEK	skin
28	chr4:87252400-87253400	Enhancers	Brain Inferior Temporal Lobe	brain

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