Variant report

Variant	rs11609314
Chromosome Location	chr12:119449966-119449967
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10775012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849622	0.85[CHB][hapmap]
rs11064652	0.85[CHB][hapmap]
rs11069219	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs11612123	0.85[CHB][hapmap]
rs11612183	0.85[CHB][hapmap]
rs11612863	0.85[CHB][hapmap]
rs12228320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs12305005	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs12305240	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs4766925	0.85[CHB][hapmap]
rs4767769	0.85[CHB][hapmap]
rs4767772	0.85[CHB][hapmap]
rs4767773	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046251	chr12:119353064-119467301	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541615	chr12:119353064-119467301	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119447000-119450400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:119447000-119450600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:119447600-119450400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:119449000-119450600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr12:119449200-119451000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr12:119449200-119451200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:119449400-119450200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:119449400-119450800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr12:119449400-119451000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr12:119449600-119451000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr12:119449600-119451000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr12:119449600-119451000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr12:119449600-119451000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr12:119449600-119451200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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