Variant report

Variant	rs11064652
Chromosome Location	chr12:119510544-119510545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119505058..119507410-chr12:119509441..119511568,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10775012	0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs10849622	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10851063	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11064650	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11069219	0.85[CHB][hapmap]
rs11609314	0.85[CHB][hapmap]
rs11609417	0.87[EUR][1000 genomes]
rs11610794	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11612123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612863	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11613424	0.84[EUR][1000 genomes]
rs11614635	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615880	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12228320	1.00[ASW][hapmap];0.85[CHB][hapmap];0.87[TSI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12228589	0.87[EUR][1000 genomes]
rs12305005	0.85[CHB][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs12305240	0.85[CHB][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs12579571	1.00[ASW][hapmap]
rs35126317	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4766925	1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4767769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4767772	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4767773	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4767774	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57961828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59060630	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119505800-119510800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:119506600-119513400	Weak transcription	Fetal Brain Male	brain
3	chr12:119507600-119513200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:119509600-119510800	Enhancers	Pancreas	Pancrea
5	chr12:119509800-119510600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:119510000-119519800	Weak transcription	Fetal Brain Female	brain
7	chr12:119510200-119510600	Enhancers	Right Atrium	heart

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