Variant report

Variant	rs11610794
Chromosome Location	chr12:119507274-119507275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10849622	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11064650	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11064652	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11612123	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11612183	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11612863	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11614635	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35126317	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4766925	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4767769	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4767772	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4767773	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4767774	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57961828	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119505800-119507400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr12:119505800-119507400	Enhancers	Fetal Muscle Leg	muscle
3	chr12:119505800-119507600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr12:119505800-119510800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:119506000-119507400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr12:119506000-119507600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr12:119506000-119510200	Weak transcription	Right Atrium	heart
8	chr12:119506200-119507400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr12:119506200-119507400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr12:119506200-119507400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:119506200-119509400	Weak transcription	Fetal Brain Female	brain
12	chr12:119506600-119509000	Enhancers	HSMMtube	muscle
13	chr12:119506600-119513400	Weak transcription	Fetal Brain Male	brain
14	chr12:119506800-119507400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr12:119506800-119507600	Enhancers	Brain Germinal Matrix	brain
16	chr12:119506800-119509600	Weak transcription	Pancreas	Pancrea
17	chr12:119507200-119509800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links