Variant report

Variant	rs12579571
Chromosome Location	chr12:119572848-119572849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10849622	1.00[ASW][hapmap]
rs11064652	1.00[ASW][hapmap]
rs11612863	1.00[ASW][hapmap]
rs12228320	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119568000-119573200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:119570800-119576200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:119571200-119594600	Weak transcription	Fetal Brain Male	brain
4	chr12:119571600-119582200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:119571800-119583000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:119572000-119583200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:119572400-119573000	ZNF genes & repeats	Brain Angular Gyrus	brain
8	chr12:119572400-119573000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:119572600-119573000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr12:119572800-119573800	Strong transcription	Brain Germinal Matrix	brain
11	chr12:119572800-119574000	Strong transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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