Variant report

Variant	rs11610605
Chromosome Location	chr12:29578048-29578049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10161540	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10219521	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10219541	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11050231	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11050232	0.94[EUR][1000 genomes]
rs11050234	0.89[ASN][1000 genomes]
rs11050237	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11050242	0.91[EUR][1000 genomes]
rs11050243	0.91[EUR][1000 genomes]
rs11050247	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11609415	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11610542	0.82[ASN][1000 genomes]
rs11611065	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11611499	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11614232	0.82[ASN][1000 genomes]
rs11614288	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11614744	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11829375	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831164	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831165	0.91[EUR][1000 genomes]
rs11833098	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11838057	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1369899	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436314	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2042512	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2350531	0.91[EUR][1000 genomes]
rs28560462	0.82[ASN][1000 genomes]
rs34137040	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35198374	0.82[ASN][1000 genomes]
rs35494573	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3741751	0.91[EUR][1000 genomes]
rs56179940	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56241141	0.82[ASN][1000 genomes]
rs56808425	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58171188	0.91[EUR][1000 genomes]
rs58359809	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59273552	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6487820	0.95[ASN][1000 genomes]
rs6487826	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6487827	0.82[ASN][1000 genomes]
rs7138552	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7295922	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7296302	0.91[EUR][1000 genomes]
rs7296554	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7297234	0.82[ASN][1000 genomes]
rs7297659	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7301354	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302425	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7302549	0.82[ASN][1000 genomes]
rs7302700	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7306407	0.91[EUR][1000 genomes]
rs7311051	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7311329	0.89[EUR][1000 genomes]
rs7312547	0.82[ASN][1000 genomes]
rs7312776	1.00[ASN][1000 genomes]
rs7313103	0.91[EUR][1000 genomes]
rs7313307	0.82[ASN][1000 genomes]
rs73276833	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276902	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73278706	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73278726	0.93[EUR][1000 genomes]
rs73278734	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73278736	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73278740	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7489238	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7953181	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7953237	0.91[EUR][1000 genomes]
rs7954043	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7963197	0.92[EUR][1000 genomes]
rs7964648	0.91[EUR][1000 genomes]
rs7964728	0.91[EUR][1000 genomes]
rs7964979	0.91[EUR][1000 genomes]
rs7965132	0.91[EUR][1000 genomes]
rs7965185	0.91[EUR][1000 genomes]
rs7975356	0.89[EUR][1000 genomes]
rs7977826	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7978026	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878837	0.91[EUR][1000 genomes]
rs880267	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv898952	chr12:29565537-29617550	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525100	chr12:29576517-29585955	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29571000-29583400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:29578000-29583200	Enhancers	Hela-S3	cervix

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