Variant report

Variant	rs56808425
Chromosome Location	chr12:29567981-29567982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10161540	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10219521	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219541	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11050231	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11050232	0.93[EUR][1000 genomes]
rs11050237	0.90[EUR][1000 genomes]
rs11050242	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11050243	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11050247	0.89[EUR][1000 genomes]
rs11609415	0.89[EUR][1000 genomes]
rs11610605	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11611065	0.88[EUR][1000 genomes]
rs11611499	0.90[EUR][1000 genomes]
rs11614288	0.90[EUR][1000 genomes]
rs11614744	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11829375	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11831164	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11831165	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11833098	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11838057	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1369899	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1436314	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2042512	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2350531	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34137040	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35494573	0.90[EUR][1000 genomes]
rs3741751	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56179940	0.90[EUR][1000 genomes]
rs58171188	0.90[EUR][1000 genomes]
rs58359809	0.90[EUR][1000 genomes]
rs59273552	0.90[EUR][1000 genomes]
rs6487826	0.90[EUR][1000 genomes]
rs7138552	0.90[EUR][1000 genomes]
rs7295922	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296302	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7296554	0.90[EUR][1000 genomes]
rs7297659	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7301354	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7302425	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302700	0.89[EUR][1000 genomes]
rs7306407	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7311051	0.90[EUR][1000 genomes]
rs7311329	0.88[EUR][1000 genomes]
rs7313103	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73276833	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73276902	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73278706	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73278726	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73278734	0.90[EUR][1000 genomes]
rs73278736	0.90[EUR][1000 genomes]
rs73278740	0.90[EUR][1000 genomes]
rs7489238	0.87[EUR][1000 genomes]
rs7953181	0.90[EUR][1000 genomes]
rs7953237	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7954043	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963197	0.91[EUR][1000 genomes]
rs7964648	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7964728	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7964979	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7965132	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7965185	0.90[EUR][1000 genomes]
rs7975356	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7977826	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7978026	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs878837	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs880267	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898952	chr12:29565537-29617550	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29567200-29568600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:29567800-29568400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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