Variant report
| Variant | rs11610852 |
|---|---|
| Chromosome Location | chr12:75093532-75093533 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:75087580..75089343-chr12:75091568..75094109,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11615915 | 0.84[EUR][1000 genomes] |
| rs12426473 | 0.82[EUR][1000 genomes] |
| rs55745112 | 0.98[EUR][1000 genomes] |
| rs56371646 | 0.90[EUR][1000 genomes] |
| rs67385168 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs67998512 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs68023260 | 0.80[EUR][1000 genomes] |
| rs7314293 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7316284 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899297 | chr12:75045728-75169675 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv899298 | chr12:75045728-75173289 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv427915 | chr12:75047293-75172692 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv832460 | chr12:75082963-75260727 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv973202 | chr12:75092726-75103510 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv983441 | chr12:75092726-75110190 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:75092400-75095200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
