Variant report

Variant	rs12426473
Chromosome Location	chr12:75106955-75106956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11610852	0.82[EUR][1000 genomes]
rs11615915	0.89[EUR][1000 genomes]
rs12424873	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67385168	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67998512	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs68023260	0.85[EUR][1000 genomes]
rs7300173	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7314293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7316284	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899297	chr12:75045728-75169675	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899298	chr12:75045728-75173289	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv427915	chr12:75047293-75172692	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832460	chr12:75082963-75260727	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv983441	chr12:75092726-75110190	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv899299	chr12:75105972-75275196	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75106000-75107000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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