Variant report

Variant	rs1161188
Chromosome Location	chr12:67836191-67836192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67824090..67825052-chr12:67835259..67836288,4	MCF-7	breast:
2	chr12:67835015..67836626-chr12:68041629..68043874,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRIP1-4	chr12:67836074-67836339	ENSG00000256172

Variant related genes	Relation type
ENSG00000127334	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1152882	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1161106	0.92[AFR][1000 genomes]
rs1161110	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1161187	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1177958	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1183493	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1613130	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17103864	1.00[CEU][hapmap]
rs1732626	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57959844	0.98[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67831000-67836600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:67835000-67836400	Enhancers	GM12878-XiMat	blood
3	chr12:67835000-67836600	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr12:67835000-67836800	Enhancers	Stomach Mucosa	stomach
5	chr12:67835000-67837000	Enhancers	Fetal Heart	heart
6	chr12:67835200-67836200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:67835200-67836200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr12:67835200-67836400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr12:67835200-67836400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr12:67835200-67836400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr12:67835200-67836400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr12:67835200-67836400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr12:67835200-67836400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:67835200-67836400	Enhancers	Ovary	ovary
15	chr12:67835200-67836400	Enhancers	Rectal Smooth Muscle	rectum
16	chr12:67835200-67836400	Enhancers	Right Atrium	heart
17	chr12:67835200-67836400	Enhancers	NHLF	lung
18	chr12:67835200-67836600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr12:67835200-67836600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr12:67835200-67836800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr12:67835200-67836800	Enhancers	Fetal Intestine Large	intestine
22	chr12:67835200-67836800	Enhancers	Fetal Intestine Small	intestine
23	chr12:67835200-67836800	Enhancers	Fetal Muscle Leg	muscle
24	chr12:67835200-67836800	Enhancers	HSMM	muscle
25	chr12:67835200-67837000	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr12:67835200-67837200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:67835400-67836200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr12:67835400-67836200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr12:67835400-67836200	Enhancers	Fetal Kidney	kidney
30	chr12:67835400-67836200	Enhancers	NHEK	skin
31	chr12:67835400-67836400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr12:67835400-67836400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr12:67835400-67836400	Enhancers	Adipose Nuclei	Adipose
34	chr12:67835400-67836400	Enhancers	Brain Cingulate Gyrus	brain
35	chr12:67835400-67836400	Active TSS	Brain Substantia Nigra	brain
36	chr12:67835400-67836400	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr12:67835400-67836400	Enhancers	HSMMtube	muscle
38	chr12:67835400-67836400	Enhancers	K562	blood
39	chr12:67835400-67836400	Flanking Active TSS	Osteobl	bone
40	chr12:67835400-67836600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr12:67835400-67836600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr12:67835400-67836600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr12:67835400-67836600	Enhancers	Fetal Thymus	thymus
44	chr12:67835400-67836600	Enhancers	NH-A	brain
45	chr12:67835400-67836800	Enhancers	Liver	Liver
46	chr12:67835400-67836800	Enhancers	Brain Angular Gyrus	brain
47	chr12:67835400-67837000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr12:67835400-67837000	Enhancers	Brain Germinal Matrix	brain
49	chr12:67835400-67837000	Enhancers	Fetal Lung	lung
50	chr12:67835600-67836400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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