Variant report

Variant	rs57959844
Chromosome Location	chr12:67844344-67844345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67844072..67846327-chr12:68042161..68044041,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127334	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1152882	0.90[AMR][1000 genomes]
rs1161106	0.82[ASN][1000 genomes]
rs1161110	0.84[ASN][1000 genomes]
rs1161188	0.98[AMR][1000 genomes]
rs1177958	0.88[AMR][1000 genomes]
rs1183493	0.84[ASN][1000 genomes]
rs1613130	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1732626	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67835600-67849000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:67842200-67844400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:67842200-67844400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr12:67842200-67844600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr12:67842400-67844400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr12:67842400-67844600	Enhancers	Primary B cells from peripheral blood	blood
7	chr12:67842600-67845000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr12:67842800-67844400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr12:67843400-67845400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr12:67843400-67847400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr12:67843600-67847600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr12:67843800-67844600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:67843800-67844600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr12:67843800-67844600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr12:67843800-67846800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr12:67843800-67849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr12:67844000-67844400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr12:67844000-67846600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr12:67844000-67849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr12:67844200-67844400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr12:67844200-67844600	Enhancers	GM12878-XiMat	blood
22	chr12:67844200-67845200	Weak transcription	Primary B cells from cord blood	blood
23	chr12:67844200-67846600	Weak transcription	Thymus	Thymus

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