Variant report

Variant	rs11612674
Chromosome Location	chr12:106617392-106617393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11612694	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4545653	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298743	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7489107	0.85[AFR][1000 genomes]
rs7955338	0.87[AFR][1000 genomes]
rs7959575	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106606600-106626400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:106614800-106621000	Weak transcription	Esophagus	oesophagus
3	chr12:106615000-106621200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:106615800-106617400	Weak transcription	Adipose Nuclei	Adipose
5	chr12:106616000-106617400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:106617000-106617400	Enhancers	Aorta	Aorta
7	chr12:106617000-106618200	Enhancers	Stomach Smooth Muscle	stomach
8	chr12:106617000-106618600	Enhancers	Ovary	ovary
9	chr12:106617200-106618000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr12:106617200-106618000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr12:106617200-106618000	Enhancers	HSMM	muscle
12	chr12:106617200-106618400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:106617200-106618600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:106617200-106618600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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