Variant report

Variant	rs7955338
Chromosome Location	chr12:106620550-106620551
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106617619..106621663-chr12:106750007..106752631,4	MCF-7	breast:
2	chr12:106620274..106621113-chr12:107312298..107313158,2	K562	blood:
3	chr12:106620298..106621234-chr12:106739383..106740277,4	MCF-7	breast:
4	chr12:106620393..106621309-chr12:106739388..106739910,3	MCF-7	breast:
5	chr12:106618176..106623447-chr12:106639085..106644031,7	MCF-7	breast:
6	chr12:106620222..106621229-chr12:106675488..106676869,10	MCF-7	breast:
7	chr12:106620082..106621241-chr12:106675890..106676828,4	MCF-7	breast:
8	chr12:106619967..106622887-chr12:106695577..106697877,2	MCF-7	breast:
9	chr12:106617980..106623111-chr12:106673260..106676714,5	MCF-7	breast:
10	chr12:106620175..106621406-chr12:106675890..106677035,8	K562	blood:
11	chr12:106620350..106621264-chr12:106684714..106685651,2	MCF-7	breast:
12	chr12:106619722..106621935-chr12:106695466..106697508,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258355	Chromatin interaction
ENSG00000238609	Chromatin interaction
ENSG00000013503	Chromatin interaction
ENSG00000166046	Chromatin interaction
ENSG00000136026	Chromatin interaction

rs_ID	r²[population]
rs10861562	0.89[CEU][hapmap]
rs11112902	1.00[CHB][hapmap]
rs11112903	1.00[CHB][hapmap]
rs11612674	0.87[AFR][1000 genomes]
rs4545653	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs7489107	0.90[AFR][1000 genomes]
rs7959267	1.00[CHB][hapmap]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106606600-106626400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:106614800-106621000	Weak transcription	Esophagus	oesophagus
3	chr12:106615000-106621200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:106617800-106620800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:106618000-106620800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:106618000-106620800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:106618000-106620800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:106618000-106620800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr12:106618000-106620800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:106618000-106620800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr12:106618000-106620800	Weak transcription	Hela-S3	cervix
12	chr12:106618000-106621000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:106618000-106621000	Weak transcription	HSMMtube	muscle
14	chr12:106618000-106621200	Weak transcription	HSMM	muscle
15	chr12:106618000-106632000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr12:106618000-106632200	Weak transcription	Psoas Muscle	Psoas
17	chr12:106618200-106620600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr12:106618200-106620800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr12:106618200-106620800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr12:106618200-106620800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr12:106618200-106620800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr12:106618200-106620800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr12:106618400-106620600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr12:106618400-106620800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr12:106618400-106620800	Weak transcription	Fetal Heart	heart
26	chr12:106618400-106620800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr12:106618400-106621000	Weak transcription	Adipose Nuclei	Adipose
28	chr12:106618600-106620800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr12:106618600-106630600	Weak transcription	Ovary	ovary
30	chr12:106618600-106632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr12:106619200-106620800	Weak transcription	Liver	Liver
32	chr12:106619400-106621200	Weak transcription	NHLF	lung
33	chr12:106619800-106621400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links