Variant report

Variant	rs11112903
Chromosome Location	chr12:106618117-106618118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106617619..106621663-chr12:106750007..106752631,4	MCF-7	breast:
2	chr12:106610256..106614349-chr12:106616727..106618978,3	K562	blood:
3	chr12:105814185..105815025-chr12:106617608..106618523,4	MCF-7	breast:
4	chr12:106616646..106619535-chr12:106735717..106738545,2	MCF-7	breast:
5	chr12:106617819..106618671-chr12:107235331..107236269,2	K562	blood:
6	chr12:105814503..105815082-chr12:106617618..106618164,4	K562	blood:
7	chr12:106610679..106612479-chr12:106616901..106619611,2	MCF-7	breast:
8	chr12:106616826..106619612-chr12:106623488..106625547,2	K562	blood:
9	chr12:106617980..106623111-chr12:106673260..106676714,5	MCF-7	breast:
10	chr12:106616785..106619757-chr12:106628880..106631149,2	MCF-7	breast:
11	chr12:106425693..106426528-chr12:106617651..106618496,2	MCF-7	breast:
12	chr12:105814168..105815093-chr12:106617674..106618652,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10861561	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11112902	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112904	1.00[ASN][1000 genomes]
rs12368489	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12814032	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17038274	0.82[AFR][1000 genomes]
rs3853778	0.83[AMR][1000 genomes]
rs3886480	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955338	1.00[CHB][hapmap]
rs7959267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106606600-106626400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:106614800-106621000	Weak transcription	Esophagus	oesophagus
3	chr12:106615000-106621200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:106617000-106618200	Enhancers	Stomach Smooth Muscle	stomach
5	chr12:106617000-106618600	Enhancers	Ovary	ovary
6	chr12:106617200-106618400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:106617200-106618600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:106617200-106618600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr12:106617400-106618400	Enhancers	Adipose Nuclei	Adipose
10	chr12:106617400-106618400	Enhancers	Fetal Heart	heart
11	chr12:106617600-106618400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:106617600-106618400	Enhancers	Fetal Muscle Trunk	muscle
13	chr12:106617800-106618200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr12:106617800-106618200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:106617800-106618400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr12:106617800-106620800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr12:106618000-106620800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr12:106618000-106620800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:106618000-106620800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr12:106618000-106620800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr12:106618000-106620800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr12:106618000-106620800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr12:106618000-106620800	Weak transcription	Hela-S3	cervix
24	chr12:106618000-106621000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr12:106618000-106621000	Weak transcription	HSMMtube	muscle
26	chr12:106618000-106621200	Weak transcription	HSMM	muscle
27	chr12:106618000-106632000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr12:106618000-106632200	Weak transcription	Psoas Muscle	Psoas

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