Variant report

Variant	rs12814032
Chromosome Location	chr12:106610267-106610268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106610256..106614349-chr12:106616727..106618978,3	K562	blood:
2	chr12:106606020..106608832-chr12:106609375..106611582,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10861561	0.88[AMR][1000 genomes]
rs11112902	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11112903	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1215769	1.00[ASN][1000 genomes]
rs1215770	1.00[ASN][1000 genomes]
rs1234589	1.00[ASN][1000 genomes]
rs1235429	1.00[ASN][1000 genomes]
rs12368489	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1236963	1.00[ASN][1000 genomes]
rs1465547	1.00[ASN][1000 genomes]
rs1548155	0.85[ASN][1000 genomes]
rs1875085	1.00[ASN][1000 genomes]
rs1896556	1.00[ASN][1000 genomes]
rs1896557	1.00[ASN][1000 genomes]
rs1896558	1.00[ASN][1000 genomes]
rs1896559	1.00[ASN][1000 genomes]
rs2114862	0.85[ASN][1000 genomes]
rs2114863	0.85[ASN][1000 genomes]
rs2173596	0.85[ASN][1000 genomes]
rs2173597	0.85[ASN][1000 genomes]
rs2556520	1.00[ASN][1000 genomes]
rs2559607	0.85[ASN][1000 genomes]
rs2559613	1.00[ASN][1000 genomes]
rs2649706	0.85[ASN][1000 genomes]
rs2649707	0.85[ASN][1000 genomes]
rs2649717	1.00[ASN][1000 genomes]
rs2649724	1.00[ASN][1000 genomes]
rs35280633	0.85[ASN][1000 genomes]
rs36192025	0.85[ASN][1000 genomes]
rs3853778	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886480	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71468293	0.85[ASN][1000 genomes]
rs7955338	1.00[CHB][hapmap]
rs7959267	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106606600-106626400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:106608600-106617200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links