Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106606020..106608832-chr12:106609375..106611582,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10861561	0.82[AMR][1000 genomes]
rs11112902	0.87[ASW][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.89[LWK][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11112903	0.87[ASW][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.83[AMR][1000 genomes]
rs1215769	1.00[ASN][1000 genomes]
rs1215770	1.00[ASN][1000 genomes]
rs1234589	1.00[ASN][1000 genomes]
rs1235429	1.00[ASN][1000 genomes]
rs12368489	0.83[AMR][1000 genomes]
rs1236963	1.00[ASN][1000 genomes]
rs12814032	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465547	1.00[ASN][1000 genomes]
rs1548155	0.85[ASN][1000 genomes]
rs1875085	1.00[ASN][1000 genomes]
rs1896556	1.00[ASN][1000 genomes]
rs1896557	1.00[ASN][1000 genomes]
rs1896558	1.00[ASN][1000 genomes]
rs1896559	1.00[ASN][1000 genomes]
rs2114862	0.85[ASN][1000 genomes]
rs2114863	0.85[ASN][1000 genomes]
rs2173596	0.85[ASN][1000 genomes]
rs2173597	0.85[ASN][1000 genomes]
rs2556520	1.00[ASN][1000 genomes]
rs2559607	0.85[ASN][1000 genomes]
rs2559613	1.00[ASN][1000 genomes]
rs2649706	0.85[ASN][1000 genomes]
rs2649707	0.85[ASN][1000 genomes]
rs2649717	1.00[ASN][1000 genomes]
rs2649724	1.00[ASN][1000 genomes]
rs35280633	0.85[ASN][1000 genomes]
rs36192025	0.85[ASN][1000 genomes]
rs3886480	0.83[AMR][1000 genomes]
rs71468293	0.85[ASN][1000 genomes]
rs7955338	0.82[CHB][hapmap]
rs7959267	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106606600-106626400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:106607400-106609400	Enhancers	Ovary	ovary
3	chr12:106608600-106617200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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