Variant report

Variant	rs2649707
Chromosome Location	chr12:106593341-106593342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11112902	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11112903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1215769	0.85[ASN][1000 genomes]
rs1215770	0.85[ASN][1000 genomes]
rs1234589	0.85[ASN][1000 genomes]
rs1235429	0.85[ASN][1000 genomes]
rs1236963	0.85[ASN][1000 genomes]
rs12814032	0.85[ASN][1000 genomes]
rs1465547	0.85[ASN][1000 genomes]
rs1548155	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875085	0.85[ASN][1000 genomes]
rs1896556	0.85[ASN][1000 genomes]
rs1896557	0.85[ASN][1000 genomes]
rs1896558	0.85[ASN][1000 genomes]
rs1896559	0.85[ASN][1000 genomes]
rs2114862	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2114863	1.00[ASN][1000 genomes]
rs2173595	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2173596	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173597	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2556520	0.85[ASN][1000 genomes]
rs2559607	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2559613	0.85[ASN][1000 genomes]
rs2649706	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649717	0.85[ASN][1000 genomes]
rs2649724	0.85[ASN][1000 genomes]
rs35280633	1.00[ASN][1000 genomes]
rs36192025	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3853778	0.85[ASN][1000 genomes]
rs71468293	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955338	1.00[CHB][hapmap]
rs7959267	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106589800-106593400	Weak transcription	Psoas Muscle	Psoas
2	chr12:106590400-106593800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:106592000-106594400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr12:106592000-106595400	Weak transcription	Liver	Liver

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