Variant report

Variant	rs11615832
Chromosome Location	chr12:120255606-120255607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120254533..120258231-chr12:120258539..120262358,3	MCF-7	breast:
2	chr12:120255241..120258410-chr12:120258603..120261965,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11064908	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11609520	0.87[EUR][1000 genomes]
rs11615808	0.87[EUR][1000 genomes]
rs203339	0.83[EUR][1000 genomes]
rs203342	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs203343	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2269938	0.94[EUR][1000 genomes]
rs2269939	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3847958	0.98[EUR][1000 genomes]
rs6490271	0.98[EUR][1000 genomes]
rs7309586	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7979697	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120209400-120293600	Weak transcription	Primary T cells from cord blood	blood
2	chr12:120223000-120255800	Weak transcription	HepG2	liver
3	chr12:120223000-120314400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:120229400-120256600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:120241600-120276600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:120242600-120259800	Weak transcription	NH-A	brain
7	chr12:120242600-120260200	Weak transcription	HUVEC	blood vessel
8	chr12:120242600-120276600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:120242600-120276800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:120242600-120279000	Weak transcription	Fetal Intestine Small	intestine
11	chr12:120242600-120279400	Weak transcription	Fetal Intestine Large	intestine
12	chr12:120242600-120293800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr12:120242600-120294400	Weak transcription	Fetal Kidney	kidney
14	chr12:120242800-120287800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr12:120243200-120288200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:120243400-120259400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr12:120245000-120256200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr12:120245000-120256200	Weak transcription	Fetal Heart	heart
19	chr12:120245200-120273000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr12:120245200-120276400	Weak transcription	Fetal Muscle Leg	muscle
21	chr12:120245400-120258400	Strong transcription	Dnd41	blood
22	chr12:120245600-120256000	Weak transcription	K562	blood
23	chr12:120245600-120256200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr12:120245600-120256200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr12:120245600-120285200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr12:120247000-120257200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr12:120247000-120274600	Weak transcription	HMEC	breast
28	chr12:120247200-120256200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr12:120247200-120256200	Weak transcription	HSMM	muscle
30	chr12:120247200-120259800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:120247200-120274400	Weak transcription	NHEK	skin
32	chr12:120247200-120285800	Weak transcription	NHLF	lung
33	chr12:120247400-120264400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr12:120247400-120285800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr12:120247800-120272800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr12:120248000-120256200	Weak transcription	GM12878-XiMat	blood
37	chr12:120248200-120256600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr12:120252000-120261600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr12:120252400-120255800	Weak transcription	Hela-S3	cervix
40	chr12:120253400-120266000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr12:120253600-120256600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr12:120253600-120257800	Strong transcription	Fetal Thymus	thymus
43	chr12:120253600-120266800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr12:120253800-120257200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr12:120253800-120257800	Strong transcription	Thymus	Thymus
46	chr12:120253800-120258000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr12:120253800-120258200	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr12:120253800-120259800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr12:120253800-120272400	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr12:120254000-120257400	Strong transcription	HUES48 Cell Line	embryonic stem cell

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