Variant report

Variant	rs203342
Chromosome Location	chr12:120234141-120234142
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120231934..120234930-chr12:120235368..120237886,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11064908	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11609520	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11615808	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11615832	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs203339	0.94[EUR][1000 genomes]
rs203343	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269938	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2269939	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3847958	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6490271	0.86[EUR][1000 genomes]
rs7309586	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7979697	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
2	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
3	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:120209400-120293600	Weak transcription	Primary T cells from cord blood	blood
5	chr12:120210000-120235400	Weak transcription	Brain Angular Gyrus	brain
6	chr12:120210000-120239200	Weak transcription	Fetal Brain Female	brain
7	chr12:120214600-120241000	Weak transcription	Fetal Intestine Large	intestine
8	chr12:120218800-120241000	Weak transcription	Fetal Kidney	kidney
9	chr12:120218800-120241200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr12:120219000-120241400	Weak transcription	NHEK	skin
11	chr12:120220000-120240600	Weak transcription	Fetal Lung	lung
12	chr12:120221600-120241000	Weak transcription	NH-A	brain
13	chr12:120221600-120241400	Weak transcription	HMEC	breast
14	chr12:120221800-120241400	Weak transcription	HSMM	muscle
15	chr12:120222000-120241200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr12:120222800-120241000	Weak transcription	Fetal Intestine Small	intestine
17	chr12:120223000-120234200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr12:120223000-120239800	Weak transcription	Brain Germinal Matrix	brain
19	chr12:120223000-120255800	Weak transcription	HepG2	liver
20	chr12:120223000-120314400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr12:120223200-120239800	Weak transcription	Osteobl	bone
22	chr12:120223200-120242000	Weak transcription	HUVEC	blood vessel
23	chr12:120223400-120234400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr12:120223400-120234400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr12:120224400-120241200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr12:120224600-120236600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:120226600-120239400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr12:120226600-120241000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr12:120227000-120241000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr12:120227000-120241000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr12:120227200-120236400	Weak transcription	Hela-S3	cervix
32	chr12:120227200-120239400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:120229000-120242400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:120229200-120234400	Weak transcription	Brain Anterior Caudate	brain
35	chr12:120229200-120234600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr12:120229400-120256600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr12:120230200-120241400	Weak transcription	HSMMtube	muscle
38	chr12:120230800-120237200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr12:120231000-120238200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr12:120231000-120244800	Strong transcription	Dnd41	blood
41	chr12:120231200-120235400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:120231200-120236000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr12:120231200-120237000	Strong transcription	Fetal Thymus	thymus
44	chr12:120231200-120237400	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr12:120231200-120237600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr12:120231200-120238400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr12:120231200-120243800	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr12:120231400-120234600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr12:120231800-120235000	Strong transcription	Fetal Stomach	stomach
50	chr12:120232000-120239800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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