Variant report

Variant	rs11617303
Chromosome Location	chr13:69810346-69810347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1119006	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1119008	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358983	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446381	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584205	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584206	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584207	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584208	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596875	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17604939	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17662037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1816912	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823107	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823108	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838811	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855898	0.97[EUR][1000 genomes]
rs1953606	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050543	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100060	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100061	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100062	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121292	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325185	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325186	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325187	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325188	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325189	0.96[EUR][1000 genomes]
rs36011878	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4265699	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4332643	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4566032	0.97[EUR][1000 genomes]
rs4594137	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635209	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644747	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883842	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884839	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56849743	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6562565	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6562567	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6562568	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6562569	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6562570	0.96[EUR][1000 genomes]
rs6562572	0.82[EUR][1000 genomes]
rs6562573	0.97[EUR][1000 genomes]
rs6562577	0.97[EUR][1000 genomes]
rs6562578	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67982440	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318385	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319519	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202110	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202111	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202112	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202158	1.00[ASN][1000 genomes]
rs73202162	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202163	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202165	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202168	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73202179	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7320680	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7323538	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328973	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335577	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336164	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7337220	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994057	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995792	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999472	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895461	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895462	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921058	0.97[EUR][1000 genomes]
rs921060	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317790	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317794	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317795	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317796	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317798	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317804	1.00[ASN][1000 genomes]
rs9529553	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9529554	0.95[EUR][1000 genomes]
rs9529555	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9529559	1.00[ASN][1000 genomes]
rs9541838	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541839	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541840	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541843	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541844	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541845	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541846	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541847	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541851	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541883	1.00[ASN][1000 genomes]
rs9541884	1.00[ASN][1000 genomes]
rs9541885	1.00[ASN][1000 genomes]
rs9541886	1.00[ASN][1000 genomes]
rs9541892	1.00[ASN][1000 genomes]
rs9541893	1.00[ASN][1000 genomes]
rs9541894	1.00[ASN][1000 genomes]
rs9541895	1.00[ASN][1000 genomes]
rs9541896	1.00[ASN][1000 genomes]
rs9564556	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9572130	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9572132	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9599450	1.00[ASN][1000 genomes]
rs9599451	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900465	chr13:69568612-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv900473	chr13:69652578-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900478	chr13:69759676-69812252	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3525265	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3525266	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69809400-69810400	Weak transcription	H9 Cell Line	embryonic stem cell

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