Variant report

Variant	rs9529559
Chromosome Location	chr13:69866425-69866426
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1119006	1.00[ASN][1000 genomes]
rs1119008	1.00[ASN][1000 genomes]
rs11617303	1.00[ASN][1000 genomes]
rs1358983	1.00[ASN][1000 genomes]
rs1446381	1.00[ASN][1000 genomes]
rs1584205	1.00[ASN][1000 genomes]
rs1584206	1.00[ASN][1000 genomes]
rs1584207	1.00[ASN][1000 genomes]
rs1584208	1.00[ASN][1000 genomes]
rs1596875	1.00[ASN][1000 genomes]
rs17604939	1.00[ASN][1000 genomes]
rs17662037	1.00[ASN][1000 genomes]
rs17663302	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1816912	1.00[ASN][1000 genomes]
rs1823107	1.00[ASN][1000 genomes]
rs1823108	1.00[ASN][1000 genomes]
rs1838811	1.00[ASN][1000 genomes]
rs1953606	1.00[ASN][1000 genomes]
rs2050543	1.00[ASN][1000 genomes]
rs2100060	1.00[ASN][1000 genomes]
rs2100061	1.00[ASN][1000 genomes]
rs2100062	1.00[ASN][1000 genomes]
rs2121292	1.00[ASN][1000 genomes]
rs2325185	1.00[ASN][1000 genomes]
rs2325186	1.00[ASN][1000 genomes]
rs2325187	1.00[ASN][1000 genomes]
rs2325188	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2325189	1.00[CHB][hapmap]
rs36011878	1.00[ASN][1000 genomes]
rs4265699	1.00[ASN][1000 genomes]
rs4332643	1.00[ASN][1000 genomes]
rs4594137	1.00[ASN][1000 genomes]
rs4635209	1.00[ASN][1000 genomes]
rs4644747	1.00[ASN][1000 genomes]
rs4883842	1.00[ASN][1000 genomes]
rs4884839	1.00[ASN][1000 genomes]
rs56849743	1.00[ASN][1000 genomes]
rs6562565	1.00[ASN][1000 genomes]
rs6562567	1.00[ASN][1000 genomes]
rs6562568	1.00[ASN][1000 genomes]
rs6562569	1.00[ASN][1000 genomes]
rs6562578	1.00[ASN][1000 genomes]
rs67982440	1.00[ASN][1000 genomes]
rs7318385	1.00[ASN][1000 genomes]
rs7319519	1.00[ASN][1000 genomes]
rs73202110	1.00[ASN][1000 genomes]
rs73202111	1.00[ASN][1000 genomes]
rs73202112	1.00[ASN][1000 genomes]
rs73202158	1.00[ASN][1000 genomes]
rs73202162	1.00[ASN][1000 genomes]
rs73202163	1.00[ASN][1000 genomes]
rs73202165	1.00[ASN][1000 genomes]
rs73202168	1.00[ASN][1000 genomes]
rs73202179	1.00[ASN][1000 genomes]
rs7320680	1.00[ASN][1000 genomes]
rs7323538	1.00[ASN][1000 genomes]
rs7328973	1.00[ASN][1000 genomes]
rs7335577	1.00[ASN][1000 genomes]
rs7336164	1.00[ASN][1000 genomes]
rs7337220	1.00[ASN][1000 genomes]
rs7994057	1.00[ASN][1000 genomes]
rs7995792	1.00[ASN][1000 genomes]
rs7999472	1.00[ASN][1000 genomes]
rs895461	1.00[ASN][1000 genomes]
rs895462	1.00[ASN][1000 genomes]
rs921060	1.00[ASN][1000 genomes]
rs9317790	1.00[ASN][1000 genomes]
rs9317794	1.00[ASN][1000 genomes]
rs9317795	1.00[ASN][1000 genomes]
rs9317796	1.00[ASN][1000 genomes]
rs9317798	1.00[ASN][1000 genomes]
rs9317804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317808	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9317809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9529553	1.00[ASN][1000 genomes]
rs9529555	1.00[ASN][1000 genomes]
rs9541838	1.00[ASN][1000 genomes]
rs9541839	1.00[ASN][1000 genomes]
rs9541840	1.00[ASN][1000 genomes]
rs9541843	1.00[ASN][1000 genomes]
rs9541844	1.00[ASN][1000 genomes]
rs9541845	1.00[ASN][1000 genomes]
rs9541846	1.00[ASN][1000 genomes]
rs9541847	1.00[ASN][1000 genomes]
rs9541851	1.00[ASN][1000 genomes]
rs9541883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541886	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541891	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9541892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9564556	1.00[ASN][1000 genomes]
rs9572130	1.00[ASN][1000 genomes]
rs9572132	1.00[ASN][1000 genomes]
rs9592635	1.00[CHB][hapmap]
rs9599450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9599451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900479	chr13:69824819-69984297	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69862800-69867000	Weak transcription	GM12878-XiMat	blood
2	chr13:69864600-69866800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:69865800-69870200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:69866400-69866800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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