Variant report

Variant	rs11619980
Chromosome Location	chr13:30508095-30508096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30508008..30510755-chr13:30510923..30512750,2	MCF-7	breast:
2	chr13:30502030..30504176-chr13:30507351..30509428,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122043	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10467438	1.00[ASN][1000 genomes]
rs11147402	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11147403	0.83[ASN][1000 genomes]
rs11619001	1.00[ASN][1000 genomes]
rs11620184	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3803269	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3803271	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475607	1.00[ASN][1000 genomes]
rs485057	1.00[ASN][1000 genomes]
rs486677	1.00[ASN][1000 genomes]
rs531084	1.00[ASN][1000 genomes]
rs548941	1.00[ASN][1000 genomes]
rs562459	1.00[ASN][1000 genomes]
rs565264	0.83[ASN][1000 genomes]
rs567291	0.83[ASN][1000 genomes]
rs571307	1.00[ASN][1000 genomes]
rs572055	1.00[ASN][1000 genomes]
rs573132	1.00[ASN][1000 genomes]
rs584801	0.83[ASN][1000 genomes]
rs585231	0.83[ASN][1000 genomes]
rs586146	0.83[ASN][1000 genomes]
rs586167	0.83[ASN][1000 genomes]
rs602388	1.00[ASN][1000 genomes]
rs602884	1.00[ASN][1000 genomes]
rs605464	1.00[ASN][1000 genomes]
rs605478	1.00[ASN][1000 genomes]
rs618877	1.00[ASN][1000 genomes]
rs619367	1.00[ASN][1000 genomes]
rs632214	1.00[ASN][1000 genomes]
rs632258	1.00[ASN][1000 genomes]
rs633496	1.00[ASN][1000 genomes]
rs646983	1.00[ASN][1000 genomes]
rs647794	1.00[ASN][1000 genomes]
rs651873	1.00[ASN][1000 genomes]
rs662224	0.83[ASN][1000 genomes]
rs669105	1.00[ASN][1000 genomes]
rs679603	0.81[ASN][1000 genomes]
rs716801	1.00[ASN][1000 genomes]
rs73159307	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338743	1.00[ASN][1000 genomes]
rs7358963	1.00[ASN][1000 genomes]
rs7996122	1.00[ASN][1000 genomes]
rs818606	0.83[ASN][1000 genomes]
rs818607	0.83[ASN][1000 genomes]
rs818608	0.83[ASN][1000 genomes]
rs865324	1.00[ASN][1000 genomes]
rs866019	1.00[ASN][1000 genomes]
rs912785	1.00[ASN][1000 genomes]
rs9285067	1.00[ASN][1000 genomes]
rs9285068	1.00[ASN][1000 genomes]
rs9578150	1.00[ASN][1000 genomes]
rs9579497	0.95[EUR][1000 genomes]
rs9579501	1.00[ASN][1000 genomes]
rs9579505	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30498800-30513200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:30499000-30510000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:30499200-30509000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:30508000-30508200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr13:30508000-30509400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr13:30508000-30509400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr13:30508000-30510000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr13:30508000-30510000	Enhancers	Thymus	Thymus

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