Variant report

Variant	rs679603
Chromosome Location	chr13:30569853-30569854
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30561192..30563961-chr13:30568123..30570548,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10467438	0.81[ASN][1000 genomes]
rs11147402	0.81[ASN][1000 genomes]
rs11619001	0.81[ASN][1000 genomes]
rs11619980	0.81[ASN][1000 genomes]
rs11620184	0.81[ASN][1000 genomes]
rs1571994	0.90[ASN][1000 genomes]
rs17588482	0.90[ASN][1000 genomes]
rs2779515	0.90[ASN][1000 genomes]
rs2779516	0.90[ASN][1000 genomes]
rs3119824	0.86[EUR][1000 genomes]
rs35820146	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3803269	0.81[ASN][1000 genomes]
rs3803271	0.81[ASN][1000 genomes]
rs475607	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4769795	0.81[EUR][1000 genomes]
rs485057	0.81[ASN][1000 genomes]
rs486677	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs531084	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs548941	0.81[ASN][1000 genomes]
rs562459	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs571307	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs572055	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs573132	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs602388	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs602884	0.81[ASN][1000 genomes]
rs605464	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs605478	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs618877	0.81[ASN][1000 genomes]
rs619367	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs632214	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs632258	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs633496	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs646983	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs647790	0.93[EUR][1000 genomes]
rs647794	0.81[ASN][1000 genomes]
rs651873	0.81[ASN][1000 genomes]
rs669105	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs705425	0.81[ASN][1000 genomes]
rs705426	0.90[ASN][1000 genomes]
rs716801	0.81[ASN][1000 genomes]
rs73159307	0.81[ASN][1000 genomes]
rs7338743	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7358963	0.81[ASN][1000 genomes]
rs7996122	0.81[ASN][1000 genomes]
rs865324	0.81[ASN][1000 genomes]
rs866019	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs912785	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9285067	0.81[ASN][1000 genomes]
rs9285068	0.81[ASN][1000 genomes]
rs9578150	0.81[ASN][1000 genomes]
rs9579501	0.81[ASN][1000 genomes]
rs9579505	0.81[ASN][1000 genomes]
rs9579513	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9579515	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30565800-30573000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:30568200-30576000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30568800-30573800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:30569200-30578400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:30569200-30580000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:30569400-30573800	Weak transcription	HSMMtube	muscle
7	chr13:30569400-30574800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:30569400-30576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:30569600-30570000	Enhancers	NHDF-Ad	bronchial
10	chr13:30569600-30570600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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