Variant report

Variant	rs9579513
Chromosome Location	chr13:30571292-30571293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11619001	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1571994	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074235	1.00[CHB][hapmap]
rs17588482	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2779515	1.00[ASN][1000 genomes]
rs2779516	1.00[ASN][1000 genomes]
rs35820146	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618877	0.82[EUR][1000 genomes]
rs679603	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs705425	0.90[ASN][1000 genomes]
rs705426	1.00[ASN][1000 genomes]
rs9579505	0.82[EUR][1000 genomes]
rs9579515	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30565800-30573000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:30568200-30576000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30568800-30573800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:30569200-30578400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:30569200-30580000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:30569400-30573800	Weak transcription	HSMMtube	muscle
7	chr13:30569400-30574800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:30569400-30576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:30570000-30573600	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links