Variant report

Variant	rs11620711
Chromosome Location	chr14:24295680-24295681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24293571..24296488-chr14:24298769..24300943,3	MCF-7	breast:
2	chr14:24293705..24296487-chr14:24298794..24300762,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11621260	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11621311	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11621641	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11621758	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11622231	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11622261	0.92[EUR][1000 genomes]
rs11622700	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11623211	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11623959	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11624495	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11624496	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11624790	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11624794	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11626089	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11626721	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11627165	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11627432	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11629337	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17256602	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28733749	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4143902	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55952438	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56375335	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57024896	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57504535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57669498	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58435090	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61410554	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977210	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977211	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977212	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977566	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61977573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142938	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7142977	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74038870	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8004413	1.00[CEU][hapmap]
rs8006105	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8006106	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8006356	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9944011	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9944082	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043299	chr14:23766696-24351724	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
3	nsv564045	chr14:24224245-24348343	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24294000-24297000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr14:24295400-24297400	Weak transcription	Muscle Satellite Cultured Cells	--

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