Variant report

Variant	rs11627432
Chromosome Location	chr14:24297563-24297564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr14:24297131-24297714	HepG2	liver:	n/a	n/a
2	FOXA2	chr14:24296927-24298031	HepG2	liver:	n/a	n/a
3	FOXA1	chr14:24297185-24297645	HepG2	liver:	n/a	n/a
4	FOXA2	chr14:24297231-24297630	HepG2	liver:	n/a	n/a
5	FOXA1	chr14:24297163-24297639	HepG2	liver:	n/a	n/a
6	NR2F2	chr14:24296804-24297721	MCF-7	breast:	n/a	n/a
7	CTCF	chr14:24297440-24297590	HepG2	liver:	n/a	n/a
8	TCF7L2	chr14:24297148-24297904	HepG2	liver:	n/a	chr14:24297442-24297456
9	FOXA2	chr14:24297260-24297596	A549	lung:	n/a	n/a
10	FOXA1	chr14:24297169-24297621	HepG2	liver:	n/a	n/a
11	FOXA2	chr14:24297115-24297657	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24137621..24139131-chr14:24297384..24299665,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258887	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11620711	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11621260	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11621311	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11621641	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11621758	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11622231	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11622261	0.92[EUR][1000 genomes]
rs11622700	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11623211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623959	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11624495	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11624496	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11624790	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11624794	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11626089	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11626721	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11627165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629337	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17256602	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28733749	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4143902	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55952438	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56375335	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57024896	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57504535	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57669498	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58435090	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61410554	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977210	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977211	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977212	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61977566	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61977573	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7142938	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7142977	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74038870	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8006105	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8006106	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8006356	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9944011	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9944082	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043299	chr14:23766696-24351724	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
3	nsv564045	chr14:24224245-24348343	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24295800-24302000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:24296400-24297600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:24296400-24299800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:24296400-24302000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr14:24296400-24302000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:24296600-24298600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:24296600-24298600	Enhancers	A549	lung
8	chr14:24296600-24301200	Enhancers	HSMMtube	muscle
9	chr14:24296600-24301800	Enhancers	HSMM	muscle
10	chr14:24296800-24297600	Enhancers	Placenta	Placenta
11	chr14:24297000-24298200	Enhancers	Colonic Mucosa	Colon
12	chr14:24297000-24298400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:24297000-24298400	Enhancers	HepG2	liver
14	chr14:24297000-24298800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr14:24297000-24299000	Enhancers	Primary hematopoietic stem cells	blood
16	chr14:24297200-24297600	Enhancers	Ovary	ovary
17	chr14:24297200-24297800	Enhancers	Gastric	stomach
18	chr14:24297200-24298600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr14:24297200-24301000	Enhancers	Hela-S3	cervix
20	chr14:24297400-24297800	Enhancers	Stomach Mucosa	stomach
21	chr14:24297400-24298400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr14:24297400-24298600	Enhancers	Duodenum Mucosa	Duodenum
23	chr14:24297400-24298800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr14:24297400-24298800	Enhancers	Small Intestine	intestine
25	chr14:24297400-24299200	Enhancers	Colon Smooth Muscle	Colon
26	chr14:24297400-24299200	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr14:24297400-24301600	Enhancers	Muscle Satellite Cultured Cells	--

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