Variant report

Variant	rs11621506
Chromosome Location	chr14:25426724-25426725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1957759	1.00[ASW][hapmap]
rs4983035	0.85[YRI][hapmap]
rs927599	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11621506	OR4K17	cis	parietal	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25412600-25426800	Weak transcription	Fetal Intestine Large	intestine
2	chr14:25422000-25428400	Weak transcription	Small Intestine	intestine
3	chr14:25422200-25427200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:25422600-25426800	Enhancers	GM12878-XiMat	blood
5	chr14:25422600-25428400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:25422600-25428400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr14:25422600-25434000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:25422800-25428400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:25423000-25427400	Enhancers	Fetal Heart	heart
10	chr14:25423400-25426800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:25423400-25428000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:25423400-25428400	Weak transcription	Adipose Nuclei	Adipose
13	chr14:25423600-25427600	Weak transcription	Brain Substantia Nigra	brain
14	chr14:25423600-25429200	Weak transcription	Placenta	Placenta
15	chr14:25423800-25427400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:25423800-25428200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:25424000-25426800	Weak transcription	Colon Smooth Muscle	Colon
18	chr14:25424200-25428000	Weak transcription	Fetal Kidney	kidney
19	chr14:25424200-25428200	Weak transcription	Fetal Lung	lung
20	chr14:25424200-25428600	Weak transcription	HepG2	liver
21	chr14:25424600-25427400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:25424600-25428000	Weak transcription	Brain Angular Gyrus	brain
23	chr14:25424600-25428000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:25424600-25428400	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:25424600-25460600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr14:25424800-25427400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr14:25424800-25428800	Weak transcription	Stomach Mucosa	stomach
28	chr14:25424800-25429200	Weak transcription	Gastric	stomach
29	chr14:25425000-25429600	Enhancers	HSMMtube	muscle
30	chr14:25425200-25428400	Weak transcription	Lung	lung
31	chr14:25425200-25429600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:25425800-25429400	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr14:25426200-25428400	Weak transcription	Fetal Muscle Leg	muscle
34	chr14:25426200-25430000	Enhancers	Brain Anterior Caudate	brain
35	chr14:25426400-25427600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:25426400-25428400	Weak transcription	Left Ventricle	heart
37	chr14:25426400-25428400	Weak transcription	Pancreas	Pancrea
38	chr14:25426400-25428400	Weak transcription	Right Atrium	heart
39	chr14:25426400-25428400	Weak transcription	Right Ventricle	heart
40	chr14:25426400-25428400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:25426400-25435000	Weak transcription	Aorta	Aorta
42	chr14:25426600-25426800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr14:25426600-25427200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:25426600-25427600	Weak transcription	HSMM	muscle
45	chr14:25426600-25430600	Enhancers	Fetal Intestine Small	intestine

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